Global Alliance for Genomics and Health Headquarters, Ontario Institute for Cancer Research, Toronto, Ontario, Canada.
Broad Institute of MIT and Harvard, Cambridge, Massachusetts.
Hum Mutat. 2018 Nov;39(11):1686-1689. doi: 10.1002/humu.23625.
The Clinical Genome Resource (ClinGen)'s work to develop a knowledge base to support the understanding of genes and variants for use in precision medicine and research depends on robust, broadly applicable, and adaptable technical standards for sharing data and information. To forward this goal, ClinGen has joined with the Global Alliance for Genomics and Health (GA4GH) to support the development of open, freely-available technical standards and regulatory frameworks for secure and responsible sharing of genomic and health-related data. In its capacity as one of the 15 inaugural GA4GH "Driver Projects," ClinGen is providing input on the key standards needs of the global genomics community, and has committed to participate on GA4GH Work Streams to support the development of: (1) a standard model for computer-readable variant representation; (2) a data model for linking variant data to annotations; (3) a specification to enable sharing of genomic variant knowledge and associated clinical interpretations; and (4) a set of best practices for use of phenotype and disease ontologies. ClinGen's participation as a GA4GH Driver Project will provide a robust environment to test drive emerging genomic knowledge sharing standards and prove their utility among the community, while accelerating the construction of the ClinGen evidence base.
临床基因组资源(ClinGen)致力于开发一个知识库,以支持对基因和变体的理解,用于精准医学和研究。这依赖于强大、广泛适用和可适应的数据和信息共享技术标准。为了实现这一目标,ClinGen 与全球基因组学和健康联盟(GA4GH)合作,支持开发开放、免费的技术标准和监管框架,以安全和负责任地共享基因组和健康相关数据。ClinGen 作为 GA4GH 的 15 个创始“驱动项目”之一,正在为全球基因组学社区的关键标准需求提供意见,并承诺参与 GA4GH 工作流,以支持开发:(1)用于计算机可读变体表示的标准模型;(2)将变体数据链接到注释的数据模型;(3)规范,以支持基因组变体知识和相关临床解释的共享;(4)使用表型和疾病本体的最佳实践集。ClinGen 作为 GA4GH 驱动项目的参与将为测试和驱动新兴的基因组知识共享标准提供一个强大的环境,并在社区中证明其效用,同时加速 ClinGen 证据库的建设。