Suppr超能文献

ClinGen 推进基因组数据共享标准作为 GA4GH 的驱动项目。

ClinGen advancing genomic data-sharing standards as a GA4GH driver project.

机构信息

Global Alliance for Genomics and Health Headquarters, Ontario Institute for Cancer Research, Toronto, Ontario, Canada.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts.

出版信息

Hum Mutat. 2018 Nov;39(11):1686-1689. doi: 10.1002/humu.23625.

Abstract

The Clinical Genome Resource (ClinGen)'s work to develop a knowledge base to support the understanding of genes and variants for use in precision medicine and research depends on robust, broadly applicable, and adaptable technical standards for sharing data and information. To forward this goal, ClinGen has joined with the Global Alliance for Genomics and Health (GA4GH) to support the development of open, freely-available technical standards and regulatory frameworks for secure and responsible sharing of genomic and health-related data. In its capacity as one of the 15 inaugural GA4GH "Driver Projects," ClinGen is providing input on the key standards needs of the global genomics community, and has committed to participate on GA4GH Work Streams to support the development of: (1) a standard model for computer-readable variant representation; (2) a data model for linking variant data to annotations; (3) a specification to enable sharing of genomic variant knowledge and associated clinical interpretations; and (4) a set of best practices for use of phenotype and disease ontologies. ClinGen's participation as a GA4GH Driver Project will provide a robust environment to test drive emerging genomic knowledge sharing standards and prove their utility among the community, while accelerating the construction of the ClinGen evidence base.

摘要

临床基因组资源(ClinGen)致力于开发一个知识库,以支持对基因和变体的理解,用于精准医学和研究。这依赖于强大、广泛适用和可适应的数据和信息共享技术标准。为了实现这一目标,ClinGen 与全球基因组学和健康联盟(GA4GH)合作,支持开发开放、免费的技术标准和监管框架,以安全和负责任地共享基因组和健康相关数据。ClinGen 作为 GA4GH 的 15 个创始“驱动项目”之一,正在为全球基因组学社区的关键标准需求提供意见,并承诺参与 GA4GH 工作流,以支持开发:(1)用于计算机可读变体表示的标准模型;(2)将变体数据链接到注释的数据模型;(3)规范,以支持基因组变体知识和相关临床解释的共享;(4)使用表型和疾病本体的最佳实践集。ClinGen 作为 GA4GH 驱动项目的参与将为测试和驱动新兴的基因组知识共享标准提供一个强大的环境,并在社区中证明其效用,同时加速 ClinGen 证据库的建设。

相似文献

1
ClinGen advancing genomic data-sharing standards as a GA4GH driver project.
Hum Mutat. 2018 Nov;39(11):1686-1689. doi: 10.1002/humu.23625.
2
ClinGen's GenomeConnect registry enables patient-centered data sharing.
Hum Mutat. 2018 Nov;39(11):1668-1676. doi: 10.1002/humu.23633.
4
The Clinical Genome Resource (ClinGen): Advancing genomic knowledge through global curation.
Genet Med. 2025 Jan;27(1):101228. doi: 10.1016/j.gim.2024.101228. Epub 2024 Oct 15.
7
Voices of GA4GH members: Collaborating in technology and policy development.
Cell Genom. 2021 Nov 10;1(2):100036. doi: 10.1016/j.xgen.2021.100036.
9
A case for expert curation: an overview of cancer curation in the Clinical Genome Resource (ClinGen).
Cold Spring Harb Mol Case Stud. 2019 Oct 23;5(5). doi: 10.1101/mcs.a004739. Print 2019 Oct.

引用本文的文献

1
Generating Clinical-Grade Gene-Disease Validity Classifications Through the ClinGen Data Platforms.
Annu Rev Biomed Data Sci. 2024 Aug;7(1):31-50. doi: 10.1146/annurev-biodatasci-102423-112456. Epub 2024 Jul 24.
3
Progress, Challenges, and Surprises in Annotating the Human Genome.
Annu Rev Genomics Hum Genet. 2020 Aug 31;21:55-79. doi: 10.1146/annurev-genom-121119-083418. Epub 2020 May 18.
4
Evidence-Based Network Approach to Recommending Targeted Cancer Therapies.
JCO Clin Cancer Inform. 2020 Jan;4:71-88. doi: 10.1200/CCI.19.00097.
5
A brief history of human disease genetics.
Nature. 2020 Jan;577(7789):179-189. doi: 10.1038/s41586-019-1879-7. Epub 2020 Jan 8.
7
A pediatric perspective on genomics and prevention in the twenty-first century.
Pediatr Res. 2020 Jan;87(2):338-344. doi: 10.1038/s41390-019-0597-z. Epub 2019 Oct 2.
8
Integrating Genomics into Healthcare: A Global Responsibility.
Am J Hum Genet. 2019 Jan 3;104(1):13-20. doi: 10.1016/j.ajhg.2018.11.014.
9
Knowledge base toward understanding actionable alterations and realizing precision oncology.
Int J Clin Oncol. 2019 Feb;24(2):123-130. doi: 10.1007/s10147-018-1378-0. Epub 2018 Dec 12.

本文引用的文献

1
Development of a consent resource for genomic data sharing in the clinical setting.
Genet Med. 2019 Jan;21(1):81-88. doi: 10.1038/s41436-018-0017-5. Epub 2018 Jun 13.
2
Genome-wide sequencing in acutely ill infants: genomic medicine's critical application?
Genet Med. 2019 Feb;21(2):498-504. doi: 10.1038/s41436-018-0055-z. Epub 2018 Jun 12.
3
Key Implications of Data Sharing in Pediatric Genomics.
JAMA Pediatr. 2018 May 1;172(5):476-481. doi: 10.1001/jamapediatrics.2017.5500.
4
Points to consider for sharing variant-level information from clinical genetic testing with ClinVar.
Cold Spring Harb Mol Case Stud. 2018 Feb 1;4(1). doi: 10.1101/mcs.a002345. Print 2018 Feb.
5
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Nucleic Acids Res. 2017 Jan 4;45(D1):D712-D722. doi: 10.1093/nar/gkw1128. Epub 2016 Nov 29.
6
GENOMICS. A federated ecosystem for sharing genomic, clinical data.
Science. 2016 Jun 10;352(6291):1278-80. doi: 10.1126/science.aaf6162.
7
Framework for responsible sharing of genomic and health-related data.
Hugo J. 2014 Dec;8(1):3. doi: 10.1186/s11568-014-0003-1. Epub 2014 Oct 17.
8
The DNA of a nation.
Nature. 2015 Aug 27;524(7566):503-5. doi: 10.1038/524503a.
9
10
ClinGen--the Clinical Genome Resource.
N Engl J Med. 2015 Jun 4;372(23):2235-42. doi: 10.1056/NEJMsr1406261. Epub 2015 May 27.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验