Suppr超能文献

使用免费软件Blinder对图像进行盲法视觉评分。

Blinded Visual Scoring of Images Using the Freely-available Software Blinder.

作者信息

Cothren Steven D, Meyer Joel N, Hartman Jessica H

机构信息

Solibyte Solutions, Durham, NC, USA.

Nicholas School of the Environment, Duke University, Durham, NC, USA.

出版信息

Bio Protoc. 2018 Dec 5;8(23). doi: 10.21769/BioProtoc.3103.

Abstract

In nearly all subfields of biomedical sciences, there are phenotypes that are currently classified by expert visual scoring. In research applications, these classifications require the experimenter to be blinded to the treatment group in order to avoid unintentional bias in scoring. Currently, many labs either use laborious and tedious methods to manually blind the images, require multiple experimenters to gather and score the data blindly or fail to properly blind the data altogether. In this protocol, we present a simple, freely available software that we created that allows the experimenter to blindly score images. In our protocol, the user loads unblinded images and defines a scoring system. The software then shows the user the images in a random order, allowing the user to select a score from their defined scoring system for each image. Furthermore, the software has an optional "quality control" mechanism where the user will be shown some images multiple times to test the robustness of the visual scoring. Finally, the software summarizes the results in an exportable file that includes unblinded summary data for each group and a full list of images with their scores. In this protocol, we briefly present directions for using the software, potential applications, and caveats/limitations to this approach.

摘要

在生物医学科学的几乎所有子领域中,都存在目前通过专家视觉评分进行分类的表型。在研究应用中,这些分类要求实验者对治疗组不知情,以避免评分时出现无意的偏差。目前,许多实验室要么使用费力且繁琐的方法手动对图像进行盲法处理,要么要求多个实验者盲目收集和评分数据,要么完全没有对数据进行适当的盲法处理。在本方案中,我们介绍一种我们创建的简单且免费的软件,该软件可让实验者对图像进行盲法评分。在我们的方案中,用户加载未盲法处理的图像并定义评分系统。然后,软件以随机顺序向用户展示图像,允许用户从其定义的评分系统中为每张图像选择一个分数。此外,该软件有一个可选的“质量控制”机制,会多次向用户展示一些图像,以测试视觉评分的稳健性。最后,软件将结果汇总到一个可导出的文件中,该文件包括每组未盲法处理的汇总数据以及带有分数的完整图像列表。在本方案中,我们简要介绍了使用该软件的说明、潜在应用以及这种方法的注意事项/局限性。

相似文献

1
Blinded Visual Scoring of Images Using the Freely-available Software Blinder.
Bio Protoc. 2018 Dec 5;8(23). doi: 10.21769/BioProtoc.3103.
4
Tify: A quality-based frame selection tool for improving the output of unstable biomedical imaging.
PLoS One. 2019 Mar 11;14(3):e0213162. doi: 10.1371/journal.pone.0213162. eCollection 2019.
5
Open-source logic-based automated sleep scoring software using electrophysiological recordings in rats.
J Neurosci Methods. 2009 Oct 30;184(1):10-8. doi: 10.1016/j.jneumeth.2009.07.009. Epub 2009 Jul 15.
6
A user-friendly software to easily count Anopheles egg batches.
Parasit Vectors. 2012 Jun 19;5:122. doi: 10.1186/1756-3305-5-122.
8
Comparison of two automatic cell-counting solutions for fluorescent microscopic images.
J Microsc. 2015 Oct;260(1):107-16. doi: 10.1111/jmi.12272. Epub 2015 Jun 22.
9
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.
BMC Genomics. 2011 Aug 8;12:402. doi: 10.1186/1471-2164-12-402.
10
A virtual experimenter to increase standardization for the investigation of placebo effects.
BMC Med Res Methodol. 2016 Jul 18;16:84. doi: 10.1186/s12874-016-0185-4.

引用本文的文献

1
Histogram-based analysis for confocal microscope images with immunofluorescent staining: A graphical-user-interface tool.
MethodsX. 2025 Apr 10;14:103306. doi: 10.1016/j.mex.2025.103306. eCollection 2025 Jun.
3
A Lightweight Browser-Based Tool for Collaborative and Blinded Image Analysis.
J Imaging. 2024 Jan 27;10(2):33. doi: 10.3390/jimaging10020033.
4
Morphological hallmarks of dopaminergic neurodegeneration are associated with altered neuron function in Caenorhabditis elegans.
Neurotoxicology. 2024 Jan;100:100-106. doi: 10.1016/j.neuro.2023.12.005. Epub 2023 Dec 8.
6
A Novel Tool for Collaborative and Blinded Orthopedic Image Analysis.
Life (Basel). 2023 Aug 24;13(9):1805. doi: 10.3390/life13091805.
7
azyx-1 is a new gene that overlaps with zyxin and affects its translation in C. elegans, impacting muscular integrity and locomotion.
PLoS Biol. 2023 Sep 15;21(9):e3002300. doi: 10.1371/journal.pbio.3002300. eCollection 2023 Sep.
8
An unbiased, automated platform for scoring dopaminergic neurodegeneration in C. elegans.
PLoS One. 2023 Jul 7;18(7):e0281797. doi: 10.1371/journal.pone.0281797. eCollection 2023.
9
An unbiased, automated platform for scoring dopaminergic neurodegeneration in .
bioRxiv. 2023 Feb 3:2023.02.02.526781. doi: 10.1101/2023.02.02.526781.

本文引用的文献

1
A score-based method for quality control of fetal hard palate assessment during routine second-trimester ultrasound examination.
Acta Obstet Gynecol Scand. 2018 Nov;97(11):1300-1308. doi: 10.1111/aogs.13418. Epub 2018 Aug 2.
3
Influence of bronchoalveolar lavage on thoracic radiography in the horse.
J Vet Sci. 2018 Jul 31;19(4):563-569. doi: 10.4142/jvs.2018.19.4.563.
4
Deep learning based tissue analysis predicts outcome in colorectal cancer.
Sci Rep. 2018 Feb 21;8(1):3395. doi: 10.1038/s41598-018-21758-3.
5
Dermatologist-level classification of skin cancer with deep neural networks.
Nature. 2017 Feb 2;542(7639):115-118. doi: 10.1038/nature21056. Epub 2017 Jan 25.
7
Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases.
J Pathol Inform. 2016 Jul 26;7:29. doi: 10.4103/2153-3539.186902. eCollection 2016.
9
Feasibility study for assessing liver fibrosis in paediatric and adolescent patients using real-time shear wave elastography.
J Med Imaging Radiat Oncol. 2015 Dec;59(6):687-94; quiz 751. doi: 10.1111/1754-9485.12388. Epub 2015 Oct 27.
10
Exposure to mitochondrial genotoxins and dopaminergic neurodegeneration in Caenorhabditis elegans.
PLoS One. 2014 Dec 8;9(12):e114459. doi: 10.1371/journal.pone.0114459. eCollection 2014.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验