Department of Sciences, University of Basilicata, Via dell'Ateneo Lucano 10, 85100, Potenza, Italy.
Department of Chemical Sciences, University Federico II of Napoli, Via Cinthia 6, 80126, Napoli, Italy.
Sci Rep. 2020 Oct 9;10(1):16875. doi: 10.1038/s41598-020-74017-9.
Antimicrobial peptides (AMPs) play a key role in the innate immunity, the first line of defense against bacteria, fungi, and viruses. AMPs are small molecules, ranging from 10 to 100 amino acid residues produced by all living organisms. Because of their wide biodiversity, insects are among the richest and most innovative sources for AMPs. In particular, the insect Hermetia illucens (Diptera: Stratiomyidae) shows an extraordinary ability to live in hostile environments, as it feeds on decaying substrates, which are rich in microbial colonies, and is one of the most promising sources for AMPs. The larvae and the combined adult male and female H. illucens transcriptomes were examined, and all the sequences, putatively encoding AMPs, were analysed with different machine learning-algorithms, such as the Support Vector Machine, the Discriminant Analysis, the Artificial Neural Network, and the Random Forest available on the CAMP database, in order to predict their antimicrobial activity. Moreover, the iACP tool, the AVPpred, and the Antifp servers were used to predict the anticancer, the antiviral, and the antifungal activities, respectively. The related physicochemical properties were evaluated with the Antimicrobial Peptide Database Calculator and Predictor. These analyses allowed to identify 57 putatively active peptides suitable for subsequent experimental validation studies.
抗菌肽 (AMPs) 在先天免疫中发挥着关键作用,是抵御细菌、真菌和病毒的第一道防线。AMPs 是由所有生物体产生的小分子,其长度在 10 到 100 个氨基酸残基之间。由于其广泛的生物多样性,昆虫是 AMPs 最丰富和最具创新性的来源之一。特别是昆虫 Hermetia illucens(双翅目:Stratiomyidae)表现出非凡的能力,可以在恶劣的环境中生存,因为它以富含微生物群落的腐烂基质为食,是 AMPs 最有前途的来源之一。检查了幼虫和雌雄混合成虫的 H. illucens 转录组,并使用 CAMP 数据库上提供的不同机器学习算法(例如支持向量机、判别分析、人工神经网络和随机森林)对所有推定编码 AMPs 的序列进行了分析,以预测其抗菌活性。此外,还使用了 iACP 工具、AVPpred 和 Antifp 服务器分别预测抗癌、抗病毒和抗真菌活性。使用抗菌肽数据库计算器和预测器评估了相关的物理化学性质。这些分析确定了 57 种推定具有活性的肽,适合进一步进行实验验证研究。