Department of Biomedical Informatics, Peking University Health Science Center.
Peking University Health Science Center.
Brief Bioinform. 2021 Jul 20;22(4). doi: 10.1093/bib/bbaa271.
Cells are compartmentalized by numerous membrane-bounded organelles and membraneless organelles (MLOs) to ensure temporal and spatial regulation of various biological processes. A number of MLOs, such as nucleoli, nuclear speckles and stress granules, exist as liquid droplets within the cells and arise from the condensation of proteins and RNAs via liquid-liquid phase separation (LLPS). By concentrating certain proteins and RNAs, MLOs accelerate biochemical reactions and protect cells during stress, and dysfunction of MLOs is associated with various pathological processes. With the development in this field, more and more relations between the MLOs and diseases have been described; however, these results have not been made available in a centralized resource. Herein, we build MloDisDB, a database which aims to gather the relations between MLOs and diseases from dispersed literature. In addition, the relations between LLPS and diseases were included as well. Currently, MloDisDB contains 771 curated entries from 607 publications; each entry in MloDisDB contains detailed information about the MLO, the disease and the functional factor in the relation. Furthermore, an efficient and user-friendly interface for users to search, browse and download all entries was provided. MloDisDB is the first comprehensive database of the relations between MLOs and diseases so far, and the database is freely accessible at http://mlodis.phasep.pro/.
细胞通过许多膜结合细胞器和无膜细胞器(MLOs)进行分隔,以确保各种生物过程的时空调节。许多 MLOs,如核仁、核斑点和应激颗粒,在细胞内作为液滴存在,并且通过蛋白质和 RNA 的液-液相分离(LLPS)从浓缩形成。通过浓缩某些蛋白质和 RNA,MLOs 可以加速生化反应并在应激期间保护细胞,并且 MLOs 的功能障碍与各种病理过程有关。随着该领域的发展,越来越多的 MLOs 与疾病之间的关系已经被描述;然而,这些结果尚未在集中资源中提供。在此,我们构建了 MloDisDB,这是一个旨在从分散的文献中收集 MLOs 和疾病之间关系的数据库。此外,还包括了 LLPS 和疾病之间的关系。目前,MloDisDB 包含 607 篇出版物中的 771 条精心策划的条目;MloDisDB 中的每条条目都包含有关 MLO、疾病和关系中功能因子的详细信息。此外,还为用户提供了一个高效且用户友好的界面,用于搜索、浏览和下载所有条目。MloDisDB 是迄今为止第一个关于 MLOs 和疾病之间关系的综合数据库,该数据库可在 http://mlodis.phasep.pro/ 免费访问。