Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Nucleic Acids Res. 2021 Jan 8;49(D1):D71-D75. doi: 10.1093/nar/gkaa982.
The Bioinformation and DDBJ Center (DDBJ Center, https://www.ddbj.nig.ac.jp) provides databases that capture, preserve and disseminate diverse biological data to support research in the life sciences. This center collects nucleotide sequences with annotations, raw sequencing data, and alignment information from high-throughput sequencing platforms, and study and sample information, in collaboration with the National Center for Biotechnology Information (NCBI) and the European Bioinformatics Institute (EBI). This collaborative framework is known as the International Nucleotide Sequence Database Collaboration (INSDC). In collaboration with the National Bioscience Database Center (NBDC), the DDBJ Center also provides a controlled-access database, the Japanese Genotype-phenotype Archive (JGA), which archives and distributes human genotype and phenotype data, requiring authorized access. The NBDC formulates guidelines and policies for sharing human data and reviews data submission and use applications. To streamline all of the processes at NBDC and JGA, we have integrated the two systems by introducing a unified login platform with a group structure in September 2020. In addition to the public databases, the DDBJ Center provides a computer resource, the NIG supercomputer, for domestic researchers to analyze large-scale genomic data. This report describes updates to the services of the DDBJ Center, focusing on the NBDC and JGA system enhancements.
生物信息学和 DDBJ 中心(DDBJ 中心,https://www.ddbj.nig.ac.jp)提供数据库,用于捕获、保存和传播各种生物数据,以支持生命科学研究。该中心与美国国立生物技术信息中心(NCBI)和欧洲生物信息学研究所(EBI)合作,从高通量测序平台收集带有注释、原始测序数据和比对信息的核苷酸序列,以及研究和样本信息。这种合作框架被称为国际核苷酸序列数据库合作组织(INSDC)。DDBJ 中心还与国家生物科学数据库中心(NBDC)合作,提供受控访问数据库日本基因型-表型档案(JGA),用于存档和分发人类基因型和表型数据,需要授权访问。NBDC 制定了共享人类数据的指导方针和政策,并审查数据提交和使用申请。为了简化 NBDC 和 JGA 的所有流程,我们于 2020 年 9 月通过引入具有组结构的统一登录平台,将这两个系统集成在一起。除了公共数据库,DDBJ 中心还为国内研究人员提供计算机资源,即 NIG 超级计算机,用于分析大规模基因组数据。本报告介绍了 DDBJ 中心服务的更新,重点介绍了 NBDC 和 JGA 系统的增强。