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弯曲杆菌的自然转化能力和水平基因转移

Natural Competence and Horizontal Gene Transfer in Campylobacter.

机构信息

Department of Biological Safety, National Reference Laboratory for Campylobacter, German Federal Institute for Risk Assessment (BfR), Diedersdorfer Weg 1, 12277, Berlin, Germany.

出版信息

Curr Top Microbiol Immunol. 2021;431:265-292. doi: 10.1007/978-3-030-65481-8_10.

Abstract

Thermophilic Campylobacter, in particular Campylobacter jejuni, C. coli and C. lari are the main relevant Campylobacter species for human infections. Due to their high capacity of genetic exchange by horizontal gene transfer (HGT), rapid adaptation to changing environmental and host conditions contribute to successful spreading and persistence of these foodborne pathogens. However, extensive HGT can exert dangerous side effects for the bacterium, such as the incorporation of gene fragments leading to disturbed gene functions. Here we discuss mechanisms of HGT, notably natural transformation, conjugation and bacteriophage transduction and limiting regulatory strategies of gene transfer. In particular, we summarize the current knowledge on how the DNA macromolecule is exchanged between single cells. Mechanisms to stimulate and to limit HGT obviously coevolved and maintained an optimal balance. Chromosomal rearrangements and incorporation of harmful mutations are risk factors for survival and can result in drastic loss of fitness. In Campylobacter, the restricted recognition and preferential uptake of free DNA from relatives are mediated by a short methylated DNA pattern and not by a classical DNA uptake sequence as found in other bacteria. A class two CRISPR-Cas system is present but also other DNases and restriction-modification systems appear to be important for Campylobacter genome integrity. Several lytic and integrated bacteriophages have been identified, which contribute to genome diversity. Furthermore, we focus on the impact of gene transfer on the spread of antibiotic resistance genes (resistome) and persistence factors. We discuss remaining open questions in the HGT field, supposed to be answered in the future by current technologies like whole-genome sequencing and single-cell approaches.

摘要

嗜热弯曲菌,尤其是空肠弯曲菌、大肠弯曲菌和唾液弯曲菌,是与人类感染相关的主要弯曲菌属物种。由于它们通过水平基因转移(HGT)具有很高的遗传交换能力,因此快速适应不断变化的环境和宿主条件有助于这些食源性病原体的成功传播和持续存在。然而,广泛的 HGT 可能会对细菌产生危险的副作用,例如基因片段的掺入导致基因功能紊乱。在这里,我们讨论 HGT 的机制,特别是自然转化、 conjugation 和噬菌体转导,并总结了限制基因转移的调控策略。特别是,我们总结了目前关于单细胞之间 DNA 大分子如何交换的知识。刺激和限制 HGT 的机制显然是共同进化的,并保持着最佳平衡。染色体重排和有害突变的掺入是生存的风险因素,可能导致适应性急剧丧失。在弯曲菌中,短甲基化 DNA 模式介导了对来自亲属的游离 DNA 的受限识别和优先摄取,而不是像其他细菌中那样通过经典的 DNA 摄取序列。存在一个 II 类 CRISPR-Cas 系统,但其他核酸酶和限制修饰系统似乎对弯曲菌基因组完整性也很重要。已经鉴定出几种裂解和整合噬菌体,它们有助于基因组多样性。此外,我们还关注了基因转移对抗生素耐药基因(耐药组)和持久性因子传播的影响。我们讨论了 HGT 领域中仍然存在的问题,预计未来通过全基因组测序和单细胞方法等当前技术可以解决这些问题。

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