Department of Infection Control, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Department of Institute of Biomedical Informatics, Cell Signal Transduction Laboratory, Bioinformatics Center, Henan Provincial Engineering Center for Tumor Molecular Medicine, School of Basic Medical Sciences, Henan University, Kaifeng, China.
Channels (Austin). 2021 Dec;15(1):375-385. doi: 10.1080/19336950.2021.1909301.
As the most common histologic subtype of renal cancer, clear cell renal cell carcinoma (ccRCC) poses a serious threat to public health. However, there are no specific molecular-targeted drugs for ccRCC at present. Human ATP-binding cassette (ABC) transporter family plays an important role in homeostasis maintenance. This study aimed to evaluate the potential diagnostic value of genes in ccRCC. A total of 952 samples of ccRCC patients (707) and controls (245) from three different datasets were included for analysis. Receiver operating characteristic analysis and t-test were used to analyze the differential expression of genes in ccRCC patients and control samples at mRNA level during screening and validations. The Cancer Genome Atlas (TCGA-ccRCC) dataset was utilized to investigate the correlation between ABC genes expression and prognostic value in ccRCC. We then investigated the interactions between and proteins in the Comparative Toxicogenomics Database (CTD). Finally, we found that ATP-binding cassette transporter G member 1 () was over-expressed in ccRCC patients compared with healthy samples at mRNA level. Cox regression analysis and Kaplan-Meier analysis showed that ccRCC patients with high expression had better overall survival (OS) than those patients with low expression (hazard ratio (HR) = 0.662, = 0.007). This study demonstrated that is a potential diagnostic and prognostic biomarker in ccRCC and discussed the molecular mechanisms underlying the relationship between ccRCC and , which might provide guidance for better management and treatment of ccRCC in the future.
作为最常见的肾细胞癌组织学亚型,透明细胞肾细胞癌(ccRCC)对公众健康构成严重威胁。然而,目前针对 ccRCC 尚无特异性的分子靶向药物。人类三磷酸腺苷结合盒(ABC)转运蛋白家族在维持内环境稳定方面发挥着重要作用。本研究旨在评估 基因在 ccRCC 中的潜在诊断价值。共纳入来自三个不同数据集的 952 例 ccRCC 患者(707 例)和对照(245 例)样本进行分析。筛选和验证过程中,采用受试者工作特征分析和 t 检验分析 基因在 ccRCC 患者和对照样本 mRNA 水平上的差异表达。利用癌症基因组图谱(TCGA-ccRCC)数据集研究 ABC 基因表达与 ccRCC 预后价值之间的相关性。然后,我们在比较毒理学基因组数据库(CTD)中研究了 和蛋白质之间的相互作用。最后,我们发现 ATP 结合盒转运蛋白 G 成员 1()在 ccRCC 患者中的 mRNA 水平上高于健康样本。Cox 回归分析和 Kaplan-Meier 分析显示,高表达 的 ccRCC 患者总生存期(OS)优于低表达患者(风险比(HR)=0.662,=0.007)。本研究表明, 是 ccRCC 潜在的诊断和预后生物标志物,并探讨了 ccRCC 与 之间关系的分子机制,这可能为未来更好地管理和治疗 ccRCC 提供指导。