de Wit Elzo, Nora Elphège P
Division of Gene Regulation, Oncode Institute, Amsterdam, the Netherlands.
Division of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Nat Rev Genet. 2023 Feb;24(2):73-85. doi: 10.1038/s41576-022-00530-4. Epub 2022 Sep 30.
Chromatin folds into dynamic loops that often span hundreds of kilobases and physically wire distant loci together for gene regulation. These loops are continuously created, extended and positioned by structural maintenance of chromosomes (SMC) protein complexes, such as condensin and cohesin, and their regulators, including CTCF, in a highly dynamic process known as loop extrusion. Genetic loss of extrusion factors is lethal, complicating their study. Inducible protein degradation technologies enable the depletion of loop extrusion factors within hours, leading to the rapid reconfiguration of chromatin folding. Here, we review how these technologies have changed our understanding of genome organization, upsetting long-held beliefs on its role in transcription. Finally, we examine recent models that attempt to reconcile observations after chronic versus acute perturbations, and discuss future developments in this rapidly developing field of research.
染色质折叠成动态环,这些环通常跨越数百千碱基,并在物理上连接远处的基因座以进行基因调控。这些环由染色体结构维持(SMC)蛋白复合物(如凝缩蛋白和黏连蛋白)及其调节因子(包括CTCF)在一个称为环挤压的高度动态过程中持续产生、延伸和定位。挤压因子的基因缺失是致命的,这使得对它们的研究变得复杂。可诱导的蛋白质降解技术能够在数小时内耗尽环挤压因子,导致染色质折叠迅速重新配置。在这里,我们回顾这些技术如何改变了我们对基因组组织的理解,打破了长期以来对其在转录中作用的看法。最后,我们研究了最近试图调和慢性与急性扰动后观察结果的模型,并讨论了这个快速发展的研究领域的未来发展。