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一株同时产 NDM-4 和 OXA-181 型碳青霉烯酶的 K51-ST16 型产碳青霉烯酶肺炎克雷伯菌的分子特征:研究其通过可接合质粒和插入序列介导的潜在传播。

Molecular Characteristics of an NDM-4 and OXA-181 Co-Producing K51-ST16 Carbapenem-Resistant Klebsiella pneumoniae: Study of Its Potential Dissemination Mediated by Conjugative Plasmids and Insertion Sequences.

机构信息

Peking University China-Japan Friendship School of Clinical Medicine, Beijing, China.

Laboratory of Clinical Microbiology and Infectious Diseases, Department of Pulmonary and Critical Care Medicine, National Center for Respiratory Medicine, China-Japan Friendship Hospital, Beijing, China.

出版信息

Antimicrob Agents Chemother. 2023 Jan 24;67(1):e0135422. doi: 10.1128/aac.01354-22. Epub 2023 Jan 5.

Abstract

The carbapenem-resistant Klebsiella pneumoniae (CRKP) strain GX34 was recovered from the respiratory tract of an elderly male with severe pneumonia, and only susceptible to amikacin, tigecycline, and colistin. Complete genome suggested that it belonged to K51-ST16 and harbored plasmid-encoded NDM-4 and OXA-181, located on IncFIB plasmid GX34p1_NDM-4 and ColKP3/IncX3 plasmid GX34p4_OXA-181, respectively. A series of transconjugants generated in the plasmid conjugation assays, including Escherichia coli J53-N1 (harboring a self-transmissible and -producing plasmid Eco-N-1-p), J53-N2 (harboring a -producing plasmid and a helper plasmid GX34p5), and J53-O (harboring a -producing plasmid), could be stably inherited after 10 days of serial passage and no significant biological fitness costs were detected. Furthermore, we first reported the gene, derived from mutation (460C>A) under meropenem pressure, could be transferred into a self-conjugative, recombined plasmid Eco-N-1-p of J53-N1. Eco-N-1-p was mainly recombined by GX34p4_OXA-181 (40,449 bp, 75.16%) and GX34p1_NDM-4 (8,553 bp, 15.89%), in which IS and IS probably played a major role. Eco-N-1-p could be transferred into the conjugation recipient K. pneumoniae KP54 and make the latter sacrifice fitness. The retention rates of remained high stability (>80% after 200 generations). The comparative genomic analysis of GX34 and those carrying or genes retrieved from the NCBI RefSeq database showed all (26/26, 100.00%) and (13/13, 100.00%) were surrounded by IS. The immediate environment of and in GX34 and some retrieved strains shared identical features, hinting at their possible dissemination. Effective measures should be taken to monitor the spread of this clone.

摘要

耐碳青霉烯肺炎克雷伯菌 (CRKP) 菌株 GX34 从一名患有严重肺炎的老年男性的呼吸道中分离得到,仅对阿米卡星、替加环素和黏菌素敏感。全基因组分析表明,该菌株属于 K51-ST16,携带质粒编码的 NDM-4 和 OXA-181,分别位于 IncFIB 质粒 GX34p1_NDM-4 和 ColKP3/IncX3 质粒 GX34p4_OXA-181 上。在质粒接合试验中生成的一系列转导体,包括携带可自我转移和产生的质粒 Eco-N-1-p 的大肠杆菌 J53-N1、携带产生质粒和辅助质粒 GX34p5 的 J53-N2 以及携带产生质粒的 J53-O,在连续传代 10 天后可稳定遗传,且未检测到显著的生物适应性成本。此外,我们首次报道了在亚胺培南压力下由 460C>A 突变导致的 基因可转移到自我接合、重组的 J53-N1 质粒 Eco-N-1-p 中。Eco-N-1-p 主要由 GX34p4_OXA-181(40449bp,75.16%)和 GX34p1_NDM-4(8553bp,15.89%)重组,其中 IS 和 IS 可能起主要作用。Eco-N-1-p 可转移到接合受体肺炎克雷伯菌 KP54 中,并使其牺牲适应性。 的保留率保持高度稳定(200 代后仍高于 80%)。对 GX34 及其从 NCBI RefSeq 数据库中检索到携带 或 基因的菌株进行比较基因组分析显示,所有 (26/26,100.00%)和 (13/13,100.00%)都被 IS 包围。GX34 中 和 的直接环境以及一些检索到的菌株具有相同的特征,暗示着它们可能的传播。应采取有效措施监测该克隆的传播。

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