Di Bari Daniele, Timr Stepan, Guiral Marianne, Giudici-Orticoni Marie-Thérèse, Seydel Tilo, Beck Christian, Petrillo Caterina, Derreumaux Philippe, Melchionna Simone, Sterpone Fabio, Peters Judith, Paciaroni Alessandro
Università degli Studi di Perugia, Dipartimento di Fisica e Geologia, Via A. Pascoli, 06123Perugia PG, Italy.
Université Grenoble Alpes, CNRS, Laboratoire Interdisciplinaire de Physique, 38400Saint-Martin-d'Héres, France.
ACS Cent Sci. 2023 Jan 9;9(1):93-102. doi: 10.1021/acscentsci.2c01078. eCollection 2023 Jan 25.
Temperature variations have a big impact on bacterial metabolism and death, yet an exhaustive molecular picture of these processes is still missing. For instance, whether thermal death is determined by the deterioration of the whole or a specific part of the proteome is hotly debated. Here, by monitoring the proteome dynamics of , we clearly show that only a minor fraction of the proteome unfolds at the cell death. First, we prove that the dynamical state of the proteome is an excellent proxy for temperature-dependent bacterial metabolism and death. The proteome diffusive dynamics peaks at about the bacterial optimal growth temperature, then a dramatic dynamical slowdown is observed that starts just below the cell's death temperature. Next, we show that this slowdown is caused by the unfolding of just a small fraction of proteins that establish an entangling interprotein network, dominated by hydrophobic interactions, across the cytoplasm. Finally, the deduced progress of the proteome unfolding and its diffusive dynamics are both key to correctly reproduce the growth rate.
温度变化对细菌代谢和死亡有很大影响,但这些过程详尽的分子层面情况仍不清楚。例如,热死亡是由蛋白质组整体还是特定部分的降解所决定,这一问题引发了激烈争论。在此,通过监测……的蛋白质组动态变化,我们清楚地表明,在细胞死亡时只有一小部分蛋白质组会展开。首先,我们证明蛋白质组的动态状态是温度依赖性细菌代谢和死亡的一个极佳指标。蛋白质组的扩散动力学在大约细菌最佳生长温度时达到峰值,然后在略低于细胞死亡温度时观察到显著的动态减缓。接下来,我们表明这种减缓是由一小部分蛋白质的展开所导致的,这些蛋白质在整个细胞质中形成了一个由疏水相互作用主导的相互纠缠的蛋白质间网络。最后,推断出的蛋白质组展开进程及其扩散动力学都是正确再现……生长速率的关键。