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二甲双胍通过抑制 METTL3 介导的 THRAP3、RBM25 和 USP4 的 m6A 甲基化来抑制多发性骨髓瘤细胞增殖并促进细胞凋亡。

Metformin attenuates multiple myeloma cell proliferation and encourages apoptosis by suppressing METTL3-mediated m6A methylation of THRAP3, RBM25, and USP4.

机构信息

Longyan First Affiliated Hospital of Fujian Medical University, Longyan, Fujian Province, China.

出版信息

Cell Cycle. 2023 Apr;22(8):986-1004. doi: 10.1080/15384101.2023.2170521. Epub 2023 Feb 10.

Abstract

Based on the results of epidemiological and preclinical studies, metformin can improve the prognosis of patients with malignant tumors. Studies have confirmed that metformin inhibits multiple myeloma (MM) cell proliferation and promotes apoptosis. Nevertheless, the specific mechanism remains to be elucidated. MM cells were intervened with different doses of metformin to detect cell proliferation and apoptosis. Western blotting and RT-qPCR were employed to assess the expression of METTL3, METTL14, WTAP, FTO, and ALKBH5 after metformin intervention. The microarray dataset GSE29023 was retrieved from the Gene Expression Omnibus (GEO) database and calculated using the R language (limma package) to authenticate differentially expressed genes (DEGs). The database for annotation, visualization, and integrated discovery (David) was applied for GO annotation analysis of DEGs. Subsequently, the string database and Cytoscape software were applied to construct protein-protein interaction (PPI) and DEM hub gene networks. Bioinformatics analysis and MeRIP were applied to predict and test METTL3-mediated m6A levels on mRNA of THRAP3, RBM25, and USP4 in METTL3 knocked-down cells. Then rescue experiments were performed to explore effects of METTL3 and THRAP3, RBM25, or USP4 on cell proliferation and apoptosis. The effect on MM cell xenograft tumor growth was observed by injection of metformin or/and overexpression of METTL3 in in vivo experiments. Metformin decreased cell proliferation and encouraged cell apoptosis in a dose-dependent manner. Global m6A modification was elevated in MM cells compared to normal cells, which was counteracted by metformin treatment. Furthermore, THRAP3, RBM25, and USP4 were identified as possible candidate genes for metformin treatment by GSE29023 data mining. METTL3 interference impaired m6A modification on mRNA of THRAP3, RBM25, and USP4 as well as expression levels. The mRNA stability and expression of THRAP3, RBM25, and USP4 was decreased after metformin treatment, which was reversed by METTL3 overexpression. THRAP3, RBM25 or USP4 knockdown reversed the assistance of METTL3 overexpression on the malignant behavior of MM cells. Finally, upregulation of METTL3 was shown to exert facilitative effects on xenograft tumor growth by blocking metformin injection. The present study demonstrates that metformin can repress the expression of THRAP3, RBM25, and USP4 by inhibiting METTL3-mediated m6A modification, which in turn hamper cell proliferation and promotes cell apoptosis. multiple myeloma (MM), Gene Expression Omnibus (GEO), differentially expressed genes (DEGs), database for annotation, visualization and integrated discovery (David), protein-protein interaction (PPI), epithelial‑mesenchymal transition (EMT), methyltransferase like 3 (METTL3), methyltransferase like 14 (METTL14), wilms tumor 1-associated protein (WTAP), methyltransferase like 16 (METTL16), acute myeloid leukemia (AML), non-small lung cancer (NSCLC), glioma stem cells (GSCs), normal bone marrow-derived plasma cells (nPCs), false discovery rate (FDR), biological process (BP), optical density (OD), horseradish peroxidase (HRP), M6A RNA immunoprecipitation assay (MeRIP).

摘要

基于流行病学和临床前研究的结果,二甲双胍可以改善恶性肿瘤患者的预后。研究已经证实,二甲双胍可以抑制多发性骨髓瘤(MM)细胞的增殖并促进细胞凋亡。然而,具体的机制仍有待阐明。用不同剂量的二甲双胍干预 MM 细胞,检测细胞增殖和凋亡情况。采用 Western blot 和 RT-qPCR 检测二甲双胍干预后 METTL3、METTL14、WTAP、FTO 和 ALKBH5 的表达。从基因表达综合数据库(GEO)中检索基因表达谱数据集 GSE29023,并用 R 语言(limma 包)进行计算,以验证差异表达基因(DEGs)。采用数据库注释、可视化和综合发现(David)对 DEGs 进行 GO 注释分析。然后,使用 STRING 数据库和 Cytoscape 软件构建蛋白质-蛋白质相互作用(PPI)和 DEM 枢纽基因网络。采用生物信息学分析和 MeRIP 预测和测试 METTL3 敲低细胞中 THRAP3、RBM25 和 USP4 mRNA 上的 METTL3 介导的 m6A 水平。然后进行挽救实验,以探索 METTL3 和 THRAP3、RBM25 或 USP4 对细胞增殖和凋亡的影响。在体内实验中,通过注射二甲双胍或/和过表达 METTL3 观察其对 MM 细胞异种移植瘤生长的影响。二甲双胍呈剂量依赖性地降低细胞增殖并促进细胞凋亡。与正常细胞相比,MM 细胞中的全局 m6A 修饰水平升高,而二甲双胍处理则降低了这种修饰水平。此外,通过 GSE29023 数据挖掘,THRAP3、RBM25 和 USP4 被鉴定为可能的二甲双胍治疗候选基因。METTL3 干扰会损害 THRAP3、RBM25 和 USP4 mRNA 上的 m6A 修饰以及其表达水平。二甲双胍处理后,THRAP3、RBM25 和 USP4 的 mRNA 稳定性和表达水平降低,而过表达 METTL3 则逆转了这一现象。THRAP3、RBM25 或 USP4 敲低逆转了 METTL3 过表达对 MM 细胞恶性行为的辅助作用。最后,结果表明上调 METTL3 可以通过阻断二甲双胍注射来促进异种移植瘤的生长。本研究表明,二甲双胍可以通过抑制 METTL3 介导的 m6A 修饰来抑制 THRAP3、RBM25 和 USP4 的表达,从而抑制细胞增殖并促进细胞凋亡。多发性骨髓瘤(MM)、基因表达综合数据库(GEO)、差异表达基因(DEGs)、数据库注释、可视化和综合发现(David)、蛋白质-蛋白质相互作用(PPI)、上皮-间充质转化(EMT)、甲基转移酶样 3(METTL3)、甲基转移酶样 14(METTL14)、威尔姆斯肿瘤 1 相关蛋白(WTAP)、甲基转移酶样 16(METTL16)、急性髓系白血病(AML)、非小细胞肺癌(NSCLC)、神经胶质瘤干细胞(GSCs)、正常骨髓源性浆细胞(nPCs)、错误发现率(FDR)、生物过程(BP)、光密度(OD)、辣根过氧化物酶(HRP)、m6A RNA 免疫沉淀分析(MeRIP)。

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