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从葡萄属中鉴定出 EDS1 的剪接变体可形成同源二聚体,但不能与 PAD4 形成异源二聚体。

A splicing variant of EDS1 from Vitis vinifera forms homodimers but no heterodimers with PAD4.

机构信息

Department für Chemie, Institut für Biochemie, Universität zu Köln, Köln, Germany.

Division of Plant Science and Technology, Interdisciplinary Plant Group, CS Bond Life Sciences Center, University of Missouri, Columbia, Missouri, USA.

出版信息

Protein Sci. 2023 Apr;32(4):e4624. doi: 10.1002/pro.4624.

Abstract

Enhanced Disease Susceptibility 1 (EDS1), a key component of microbe-triggered immunity and effector-triggered immunity in most higher plants, forms functional heterodimeric complexes with its homologs Phytoalexin Deficient 4 (PAD4) or Senescence-associated Gene 101 (SAG101). Here, the crystal structure of VvEDS1 , the N-terminal domain of EDS1 from Vitis vinifera, is reported, representing the first structure of an EDS1 entity beyond the model plant Arabidopsis thaliana. VvEDS1 has an α/β-hydrolase fold, is similar to the N-terminal domain of A. thaliana EDS1 and forms stable homodimers in solution as well as in crystals. These VvEDS1 homodimers are spatially incompatible with heterodimers with PAD4 or SAG101, they explain why VvEDS1 does not interact with V. vinifera PAD4 according to gel filtration, and they serve as a guide to develop a plausible, albeit experimentally not verified model of full-length EDS1. VvEDS1 is a splicing variant comprising two of three exons of the VvEDS1 gene. It originates from a naturally occurring mRNA, in which the first of two introns was removed while the second one containing a stop codon close to the exon/intron border was retained. This is a potential case of intron retention and the first report of this phenomenon in the context of EDS1. Its biological significance has not yet been clarified, nor has the question if a VvEDS1 protein with a specific function can occur under physiological conditions.

摘要

增强型疾病易感性 1(EDS1)是大多数高等植物中微生物触发免疫和效应物触发免疫的关键组成部分,它与同源物 Phytoalexin Deficient 4(PAD4)或 Senescence-associated Gene 101(SAG101)形成功能性异二聚体复合物。在这里,报告了 VvEDS1 的晶体结构,VvEDS1 是葡萄 Vitis vinifera EDS1 的 N 端结构域,代表了超越模式植物拟南芥的第一个 EDS1 实体结构。VvEDS1 具有α/β-水解酶折叠,与拟南芥 EDS1 的 N 端结构域相似,在溶液中和晶体中均形成稳定的同源二聚体。这些 VvEDS1 同源二聚体在空间上与 PAD4 或 SAG101 的异二聚体不兼容,这解释了为什么 VvEDS1 根据凝胶过滤不与 V.vinifera PAD4 相互作用,并且它们作为指导开发合理的、尽管实验尚未验证的全长 EDS1 模型。VvEDS1 是一种剪接变体,包含 VvEDS1 基因的三个外显子中的两个。它源自一种天然存在的 mRNA,其中两个内含子中的第一个被去除,而第二个内含子包含一个靠近外显子/内含子边界的终止密码子。这是一个潜在的内含子保留的例子,也是 EDS1 背景下的第一个此类报告。它的生物学意义尚未阐明,也没有关于在生理条件下是否可以存在具有特定功能的 VvEDS1 蛋白的问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba4c/10044092/ca92a36fbd04/PRO-32-e4624-g001.jpg

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