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引起人类感染的罕见菌株的基因组特征和毒力特征。

Genomic features and virulence characteristics of a rare strain causing human infection.

机构信息

Department of Laboratory Medicine, Daping Hospital, Army Medical University (Third Military Medical University), Chongqing, 400042, P.R. China.

Key Laboratory of Clinical Laboratory Diagnostics (Ministry of Education), College of Laboratory Medicine, Chongqing Medical University, Chongqing, 400016, P.R. China.

出版信息

J Med Microbiol. 2023 May;72(5). doi: 10.1099/jmm.0.001688.

Abstract

is a clinically rare opportunistic pathogen in the genus , and the genomic features and virulence characteristics of strains that cause human infection remain unclear. strains with different virulence induce different host innate immune responses .. This work aimed to understand the sequence diversity, phylogenetic relationship, and virulence of BPM causing human infection. The comparative molecular and genomic analyses, and mouse infection studies were applied to analyse the virulence and genomic features of BPM originating from China. The whole genome sequence analysis showed that the genomes of BPM and other avirulent strains were broadly similar, comprising two highly syntenic chromosomes with comparable numbers of coding regions (CDs), protein family distributions, and horizontally acquired genomic islands. By examining species-specific genomic regions, we obtained molecular explanations for previously known differences in virulence and discovered the potential specific virulence-associated genes of BPM, which likely work together to confer the virulence of BPM. Significantly reduced LD and survival rates during mouse infection experiments were found in BPM compared to the avirulent E264 (BtE264). Taken together, the results of this study provide basic information on the genomic features and virulence characteristics of the virulent strain BPM, which is helpful for understanding its evolution as it relates to pathogenesis and environmental adaptability.

摘要

是属中一种临床罕见的机会性病原体,引起人类感染的 菌株的基因组特征和毒力特征尚不清楚。具有不同毒力的 菌株诱导不同的宿主固有免疫反应。本研究旨在了解引起人类感染的 BPM 的序列多样性、系统发育关系和毒力。应用比较分子和基因组分析以及小鼠感染研究来分析源自中国的 BPM 的毒力和基因组特征。全基因组序列分析表明,BPM 和其他无毒菌株的基因组广泛相似,包含两个高度同源的染色体,具有可比数量的编码区 (CDs)、蛋白家族分布和水平获得的基因组岛。通过检查种特异性基因组区域,我们获得了先前已知毒力差异的分子解释,并发现了 BPM 的潜在特定毒力相关基因,这些基因可能共同赋予 BPM 的毒力。与无毒的 E264 (BtE264) 相比,在小鼠感染实验中 BPM 的 LD 和存活率显著降低。综上所述,本研究的结果为毒力菌株 BPM 的基因组特征和毒力特征提供了基础信息,有助于了解其与发病机制和环境适应性相关的进化。

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