Department of Life Sciences, Presidency University, 86/1 College Street, Kolkata, West Bengal, 700073, India.
Department of Biochemistry, Institute of Home Economics, University of Delhi, New Delhi, 110016, India.
Mol Biol Rep. 2023 Sep;50(9):7283-7294. doi: 10.1007/s11033-023-08657-1. Epub 2023 Jul 8.
Tumor necrosis factor (TNF)-related apoptosis-inducing ligand (TRAIL) is well known for its unique ability to induce apoptosis in cancer cells but not normal cells. However, a subpopulation of cancer cells exist that does not respond to toxic doses of TRAIL. In this study, we aimed to identify key factors regulating TRAIL resistance in breast cancer.
rhTRAIL (recombinant human TRAIL) resistant cells (TR) isolated from TRAIL sensitive MDA-MB-231 parental cells (TS) were confirmed using trypan blue assay, cell viability assay and AO/EtBr (acridine orange/ethidium bromide) staining. Microarray was performed followed by analysis using DAVID and Cytoscape bioinformatics software to identify the candidate hub gene. Gene expression of the candidate gene was confirmed using real-time PCR and western blot. Candidate gene was overexpressed via transient transfection to identify its significance in the context of rhTRAIL. Breast cancer patient data was obtained from The Cancer Genome Atlas (TCGA) database.
Whole transcriptome analysis identified 4907 differentially expressed genes (DEGs) between TS and TR cells. CDH1 was identified as the candidate hub gene, with 18-degree centrality. We further observed CDH1 protein to be downregulated, overexpression of which increased apoptosis in TR cells after rhTRAIL treatment. TCGA patient data analysis also showed CDH1 mRNA to be low in TRAIL resistant patient group compared to TRAIL sensitive group.
CDH1 overexpression sensitizes TR cells towards rhTRAIL induced apoptosis. Therefore, we can hypothesize that CDH1 expression should be taken into account while performing TRAIL therapy in breast cancer.
肿瘤坏死因子(TNF)相关凋亡诱导配体(TRAIL)以其诱导癌细胞凋亡而不诱导正常细胞凋亡的独特能力而闻名。然而,存在一小部分癌细胞对 TRAIL 的毒性剂量没有反应。在这项研究中,我们旨在确定调节乳腺癌中 TRAIL 耐药性的关键因素。
用台盼蓝法、细胞活力测定法和 AO/EtBr(吖啶橙/溴化乙锭)染色法证实从 TRAIL 敏感 MDA-MB-231 亲本细胞(TS)中分离的 rhTRAIL(重组人 TRAIL)耐药细胞(TR)。采用 DAVID 和 Cytoscape 生物信息学软件进行微阵列分析,以确定候选枢纽基因。使用实时 PCR 和 Western blot 确认候选基因的基因表达。通过瞬时转染过表达候选基因,以确定其在 rhTRAIL 背景下的意义。从癌症基因组图谱(TCGA)数据库中获取乳腺癌患者数据。
全转录组分析鉴定出 TS 和 TR 细胞之间有 4907 个差异表达基因(DEGs)。CDH1 被鉴定为候选枢纽基因,其中心度为 18 度。我们进一步观察到 CDH1 蛋白表达下调,rhTRAIL 处理后,其过表达增加了 TR 细胞的凋亡。TCGA 患者数据分析还表明,与 TRAIL 敏感组相比,TRAIL 耐药组的 CDH1 mRNA 表达水平较低。
CDH1 的过表达使 TR 细胞对 rhTRAIL 诱导的凋亡敏感。因此,我们可以假设在乳腺癌中进行 TRAIL 治疗时应考虑 CDH1 的表达。