Laboratory for Epigenetics Drug Discovery, RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, 230-0045, Japan.
Laboratory for Protein Functional and Structural Biology, RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, 230-0045, Japan.
Nat Commun. 2023 Jul 17;14(1):4103. doi: 10.1038/s41467-023-39735-4.
Histone acetylation is important for the activation of gene transcription but little is known about its direct read/write mechanisms. Here, we report cryogenic electron microscopy structures in which a p300/CREB-binding protein (CBP) multidomain monomer recognizes histone H4 N-terminal tail (NT) acetylation (ac) in a nucleosome and acetylates non-H4 histone NTs within the same nucleosome. p300/CBP not only recognized H4NTac via the bromodomain pocket responsible for reading, but also interacted with the DNA minor grooves via the outside of that pocket. This directed the catalytic center of p300/CBP to one of the non-H4 histone NTs. The primary target that p300 writes by reading H4NTac was H2BNT, and H2BNTac promoted H2A-H2B dissociation from the nucleosome. We propose a model in which p300/CBP replicates histone N-terminal tail acetylation within the H3-H4 tetramer to inherit epigenetic storage, and transcribes it from the H3-H4 tetramer to the H2B-H2A dimers to activate context-dependent gene transcription through local nucleosome destabilization.
组蛋白乙酰化对于基因转录的激活很重要,但对其直接的读写机制知之甚少。在这里,我们报告了低温电子显微镜结构,其中 p300/CREB 结合蛋白 (CBP) 多结构域单体在核小体中识别组蛋白 H4 N 端尾巴 (NT) 的乙酰化 (ac),并在同一核小体中乙酰化非 H4 组蛋白 NT。p300/CBP 不仅通过负责读取的溴结构域口袋识别 H4NTac,还通过该口袋的外部与 DNA 小沟相互作用。这将 p300/CBP 的催化中心引导到其中一个非 H4 组蛋白 NT。p300 通过读取 H4NTac 进行书写的主要靶标是 H2BNT,并且 H2BNTac 促进 H2A-H2B 从核小体解离。我们提出了一个模型,其中 p300/CBP 在 H3-H4 四聚体中复制组蛋白 N 端尾巴的乙酰化,以继承表观遗传储存,并将其从 H3-H4 四聚体转录到 H2B-H2A 二聚体,通过局部核小体去稳定化激活上下文相关的基因转录。