Rahman Shakilur, Nath Subham, Mohan Utpal, Das Amit Kumar
Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal 721302, India.
National Institute of Pharmaceutical Education and Research Kolkata, Kolkata, West Bengal 700054, India.
ACS Omega. 2023 Aug 2;8(32):29292-29301. doi: 10.1021/acsomega.3c02691. eCollection 2023 Aug 15.
-mediated infection is a serious threat in this antimicrobial-resistant world. has become a "superbug" by challenging conventional as well as modern treatment strategies. Nowadays, drug repurposing has become a new trend for the discovery of new drug molecules. This study focuses on evaluating FDA-approved drugs that can be repurposed against infection. Steered molecular dynamics (SMD) has been performed for Lumacaftor and Olaparib against staphylococcal FemX to understand their binding to the active site. A time-dependent external force or rupture force has been applied to the ligands to calculate the force required to dislocate the ligand from the binding pocket. SMD analysis indicates that Lumacaftor has a high affinity for the substrate binding pocket in comparison to Olaparib. Umbrella sampling exhibits that Lumacaftor possesses a higher free energy barrier to displace it from the ligand-binding site. The bactericidal activity of Lumacaftor and Olaparib has been tested, and it shows that Lumacaftor has moderate activity along with biofilm inhibition potential (MIC value with conc. 128 μg/mL). Pharmacokinetic and toxicology evaluations indicate that Lumacaftor has higher pharmacokinetic potential with lower toxicity. This is the first experimental report where staphylococcal FemX has been targeted for the discovery of new drugs. It is suggested that Lumacaftor may be a potential lead molecule against .
在这个存在抗菌耐药性的世界里,[病原体名称未给出]介导的感染是一个严重威胁。[病原体名称未给出]通过挑战传统以及现代治疗策略,已成为一种“超级细菌”。如今,药物重新利用已成为发现新药物分子的一种新趋势。本研究着重评估可重新用于对抗[病原体名称未给出]感染的美国食品药品监督管理局(FDA)批准的药物。针对鲁马卡托和奥拉帕尼针对金黄色葡萄球菌FemX进行了引导分子动力学(SMD)研究,以了解它们与活性位点的结合情况。已对配体施加随时间变化的外力或破裂力,以计算将配体从结合口袋中脱位所需的力。SMD分析表明,与奥拉帕尼相比,鲁马卡托对底物结合口袋具有高亲和力。伞形采样显示,鲁马卡托具有更高的自由能势垒,使其难以从配体结合位点被取代。已测试了鲁马卡托和奥拉帕尼的杀菌活性,结果表明鲁马卡托具有中等活性以及生物膜抑制潜力(浓度为128μg/mL时的最低抑菌浓度值)。药代动力学和毒理学评估表明,鲁马卡托具有更高的药代动力学潜力且毒性较低。这是第一份针对金黄色葡萄球菌FemX进行新药发现的实验报告。有人提出,鲁马卡托可能是对抗[病原体名称未给出]的潜在先导分子。