Department of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Program in Virology, Harvard Medical School, Boston, MA 02115, USA.
Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544, USA.
Cell. 2023 Oct 26;186(22):4936-4955.e26. doi: 10.1016/j.cell.2023.08.032. Epub 2023 Oct 3.
Intrinsically disordered regions (IDRs) represent a large percentage of overall nuclear protein content. The prevailing dogma is that IDRs engage in non-specific interactions because they are poorly constrained by evolutionary selection. Here, we demonstrate that condensate formation and heterotypic interactions are distinct and separable features of an IDR within the ARID1A/B subunits of the mSWI/SNF chromatin remodeler, cBAF, and establish distinct "sequence grammars" underlying each contribution. Condensation is driven by uniformly distributed tyrosine residues, and partner interactions are mediated by non-random blocks rich in alanine, glycine, and glutamine residues. These features concentrate a specific cBAF protein-protein interaction network and are essential for chromatin localization and activity. Importantly, human disease-associated perturbations in ARID1B IDR sequence grammars disrupt cBAF function in cells. Together, these data identify IDR contributions to chromatin remodeling and explain how phase separation provides a mechanism through which both genomic localization and functional partner recruitment are achieved.
无规则区域(IDRs)占核蛋白总含量的很大一部分。普遍的观点是,IDRs 进行非特异性相互作用,因为它们受到进化选择的约束较差。在这里,我们证明了在 mSWI/SNF 染色质重塑剂 cBAF 的 ARID1A/B 亚基内,凝聚形成和异质相互作用是 IDR 的独特且可分离的特征,并确定了每个贡献的不同“序列语法”。凝聚是由均匀分布的酪氨酸残基驱动的,而伴侣相互作用则由富含丙氨酸、甘氨酸和谷氨酸残基的非随机块介导。这些特征集中了特定的 cBAF 蛋白质-蛋白质相互作用网络,对于染色质定位和活性是必不可少的。重要的是,人类疾病相关的 ARID1B IDR 序列语法扰动破坏了细胞中 cBAF 的功能。总之,这些数据确定了 IDR 对染色质重塑的贡献,并解释了相分离如何提供一种机制,通过这种机制可以实现基因组定位和功能伴侣招募。