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UNITE 数据库:用于真菌和其他真核生物的分子鉴定和分类学交流:序列、分类单元和分类学的再考虑。

The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered.

机构信息

Natural History Museum, University of Tartu, Vanemuise 46, 51003 Tartu, Estonia.

Department of Biological and Environmental Sciences, University of Gothenburg, Box 453, 405 30 Göteborg, Sweden.

出版信息

Nucleic Acids Res. 2024 Jan 5;52(D1):D791-D797. doi: 10.1093/nar/gkad1039.

Abstract

UNITE (https://unite.ut.ee) is a web-based database and sequence management environment for molecular identification of eukaryotes. It targets the nuclear ribosomal internal transcribed spacer (ITS) region and offers nearly 10 million such sequences for reference. These are clustered into ∼2.4M species hypotheses (SHs), each assigned a unique digital object identifier (DOI) to promote unambiguous referencing across studies. UNITE users have contributed over 600 000 third-party sequence annotations, which are shared with a range of databases and other community resources. Recent improvements facilitate the detection of cross-kingdom biological associations and the integration of undescribed groups of organisms into everyday biological pursuits. Serving as a digital twin for eukaryotic biodiversity and communities worldwide, the latest release of UNITE offers improved avenues for biodiversity discovery, precise taxonomic communication and integration of biological knowledge across platforms.

摘要

UNITE(https://unite.ut.ee)是一个基于网络的数据库和序列管理环境,用于真核生物的分子鉴定。它针对核核糖体内部转录间隔区(ITS)区域,并提供近 1000 万条此类序列作为参考。这些序列被聚类成约 240 万个物种假设 (SH),每个 SH 都被分配了一个唯一的数字对象标识符 (DOI),以促进不同研究之间的明确引用。UNITE 用户贡献了超过 60 万条第三方序列注释,这些注释与一系列数据库和其他社区资源共享。最近的改进促进了跨界生物关联的检测,并将未描述的生物群体纳入日常生物研究中。作为全球真核生物多样性和群落的数字双胞胎,最新版本的 UNITE 提供了更好的途径来发现生物多样性、进行精确的分类学交流,并在不同平台上整合生物知识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee69/10767974/81b76027247f/gkad1039figgra1.jpg

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