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检测肠杆菌科中的稀有碳青霉烯酶——两种比色法和三种基于 CIM 的碳青霉烯酶检测方法的比较。

Detection of rare carbapenemases in Enterobacterales-comparison of two colorimetric and three CIM-based carbapenemase assays.

机构信息

Klinikum Oldenburg, Institute of Medical Microbiology and Virology, Oldenburg, Germany.

Carl von Ossietzky University Oldenburg, Institute of Medical Microbiology and Virology, Oldenburg, Germany.

出版信息

Microbiol Spectr. 2024 Feb 6;12(2):e0301523. doi: 10.1128/spectrum.03015-23. Epub 2024 Jan 17.

Abstract

Rapid and reliable detection of carbapenemase-producing Enterobacterales (CPE) is crucial for prompt treatment and infection control. Most assays target the primary four enzymes (KPC, OXA-48-like, VIM, and NDM), often missing less common variants (e.g., GES, IMI, OXA-23, and OXA-58). Therefore, assays based on the hydrolysis of carbapenems are recommended in addition to differentiation tests such as PCR or immunochromatographic assays. The aim of this study was to compare the currently Clinical and Laboratory Standards Institute (CLSI)-recommended tests mCIM (modified carbapenem inactivation method) and Carba NP with new colorimetric tests (NitroSpeed-Carba NP) and novel variations of the carbapenem inactivation method (CIM) such as simplified CIM (sCIM) or modified zinc-supplemented CIM (mzCIM). The challenge collection included 205 clinical isolates, 139 CPE vs 66 non-CPE. Among all 205 isolates, the sensitivity/specificity of mCIM was 81.3%/98.5%, Carba NP 76.3%/100%, NitroSpeed-Carba NP 86.3%/78.8%, sCIM 100%/94%, and mzCIM 97.8%/98.5%. For rare carbapenemases ( = 48), the sensitivity of mzCIM (98.3%) and sCIM (100%) was higher than that of mCIM (60.4%), Carba NP (50%), or NitroSpeed-Carba NP (70.2%). Most indeterminate results occurred for mCIM (14.4%), Carba NP (8.2%), and sCIM (6.3%). The detection of rare carbapenemases remains challenging with the currently recommended assays. The CIM-based tests demonstrated superior sensitivity, with sCIM and mzCIM outperforming the currently recommended mCIM and Carba NP, especially among isolates with weakly hydrolyzing carbapenemases (e.g., OXA-23 and OXA-58). Although colorimetric assays provide more rapid results, laboratories have to be aware of the low sensitivity for rare carbapenemases. Both sCIM and the new mzCIM performed well, are cost-effective, and can easily be implemented in any laboratory.IMPORTANCEDetection of so-called rare carbapenemases (e.g., GES, IMI, OXA-23, and OXA-58) in Enterobacterales is challenging, and data on the performance of currently available assays are scarce. This study systematically assessed the performance of currently recommended and novel hydrolysis-based assays on a set of molecularly characterized isolates. It demonstrates that the currently recommended assays mCIM and Carba NP perform well on isolates producing common carbapenemases such as KPC, VIM, NDM, and OXA-48, but have only a moderate sensitivity in the detection of rare carbapenemases. In contrast, the newer CIM-based variants, sCIM and mzCIM, are equally capable of detecting frequent and uncommon carbapenemases. These assays could potentially help to improve our knowledge on the epidemiology of these "rare" enzymes.

摘要

快速可靠地检测碳青霉烯酶产生的肠杆菌科(CPE)对于及时治疗和感染控制至关重要。大多数检测方法针对的是主要的四种酶(KPC、OXA-48 样、VIM 和 NDM),但往往会错过不太常见的变体(例如 GES、IMI、OXA-23 和 OXA-58)。因此,建议在进行区分试验(如 PCR 或免疫层析试验)的基础上,使用基于碳青霉烯水解的试验。本研究的目的是比较目前临床和实验室标准协会(CLSI)推荐的 mCIM(改良碳青霉烯失活法)和 Carba NP 与新的比色试验(NitroSpeed-Carba NP)以及新型碳青霉烯失活法(CIM)的变体,如简化 CIM(sCIM)或改良锌补充 CIM(mzCIM)。挑战集包括 205 株临床分离株,其中 139 株为 CPE 与 66 株非 CPE。在所有 205 株分离株中,mCIM 的灵敏度/特异性为 81.3%/98.5%,Carba NP 为 76.3%/100%,NitroSpeed-Carba NP 为 86.3%/78.8%,sCIM 为 100%/94%,mzCIM 为 97.8%/98.5%。对于罕见的碳青霉烯酶(n = 48),mzCIM(98.3%)和 sCIM(100%)的灵敏度高于 mCIM(60.4%)、Carba NP(50%)或 NitroSpeed-Carba NP(70.2%)。大多数不确定结果发生在 mCIM(14.4%)、Carba NP(8.2%)和 sCIM(6.3%)。目前推荐的检测方法仍然难以检测罕见的碳青霉烯酶。基于 CIM 的检测方法显示出更高的灵敏度,其中 sCIM 和 mzCIM 优于目前推荐的 mCIM 和 Carba NP,尤其是在水解能力较弱的碳青霉烯酶(如 OXA-23 和 OXA-58)的分离株中。虽然比色检测法提供了更快速的结果,但实验室必须注意到对罕见碳青霉烯酶的低灵敏度。sCIM 和新的 mzCIM 表现良好,具有成本效益,并且可以很容易地在任何实验室实施。重要的是,在肠杆菌科中检测所谓的罕见碳青霉烯酶(例如 GES、IMI、OXA-23 和 OXA-58)具有挑战性,并且关于目前可用检测方法性能的数据很少。本研究系统地评估了目前推荐的和新型水解检测方法在一组分子特征明确的分离株上的性能。结果表明,目前推荐的 mCIM 和 Carba NP 检测方法在检测常见的碳青霉烯酶(如 KPC、VIM、NDM 和 OXA-48)时表现良好,但在检测罕见的碳青霉烯酶时,灵敏度仅为中等。相比之下,更新的基于 CIM 的变体 sCIM 和 mzCIM 同样能够检测到常见和罕见的碳青霉烯酶。这些检测方法有可能有助于提高我们对这些“罕见”酶的流行病学的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/64e5/10845984/a516a9e58076/spectrum.03015-23.f001.jpg

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