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AF-DP蛋白的抗菌活性及细胞膜破坏途径。

antimicrobial activity of AF-DP protein and approach of cell membrane disruption.

作者信息

Velayatipour Fatemeh, Tarrahimofrad Hossein, Zamani Javad, Fotouhi Fatemeh, Aminzadeh Saeed

机构信息

Bioprocess Engineering Group, Institute of Industrial and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran.

Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran.

出版信息

J Biomol Struct Dyn. 2025 Jul;43(10):5133-5150. doi: 10.1080/07391102.2024.2308763. Epub 2024 Feb 6.

Abstract

Microbial resistance against common antibiotics has become one of the most serious threats to human health. The increasing statistics on this problem show the necessity of finding a way to deal with it. In recent years, antimicrobial peptides with unique properties and the capability of targeting a wide range of pathogens, have been considered as a potential for replacing common antibiotics. A small chitin-binding protein with anticandidal activity was isolated from seeds by Neto and colleagues in 2017, which very much resembled antimicrobial peptides. In this study, the antimicrobial protein 'AF-DP' was identified and characterized. AF-DP was heterologously expressed, purified, and characterized, and its 3D structure was predicted. Six molecular dynamic simulations were performed to investigate how the protein interacts with Gram-negative inner and outer, Gram-positive, fungal, cancerous, and normal mammalian membranes. Also, its antimicrobial and anticancer activity was assessed minimum inhibition concentration (MIC) and MTT assays, respectively. This protein with 111 amino acids and a total net charge (of 10.5) has been predicted to be mainly composed of alpha helix and random coils. Its MIC affecting the growth of , , and was 30 µg/ml, 100 µg/ml, and 100 µg/ml, respectively; AF-DP showed anticancer activity against MCF-7 breast cancer cell line. Scanning electron microscopic analysis confirmed the creation of pores and scratches on the surface of the bacterial membrane. The results of this research show that AF-DP can be a candidate for the production of new drugs as an AMP with antimicrobial activity.

摘要

微生物对常用抗生素的耐药性已成为对人类健康最严重的威胁之一。关于这一问题不断增加的统计数据表明,有必要找到应对之策。近年来,具有独特特性且能靶向多种病原体的抗菌肽,被视为替代常用抗生素的一种潜力。2017年,内托及其同事从种子中分离出一种具有抗念珠菌活性的小几丁质结合蛋白,它与抗菌肽非常相似。在本研究中,对抗菌蛋白“AF-DP”进行了鉴定和表征。AF-DP经异源表达、纯化和表征,并预测了其三维结构。进行了六项分子动力学模拟,以研究该蛋白如何与革兰氏阴性菌的内膜和外膜、革兰氏阳性菌、真菌、癌细胞和正常哺乳动物细胞膜相互作用。此外,分别通过最低抑菌浓度(MIC)和MTT试验评估了其抗菌和抗癌活性。这种含有111个氨基酸且总净电荷为10.5的蛋白,预计主要由α螺旋和无规卷曲组成。其对大肠杆菌、金黄色葡萄球菌和白色念珠菌生长的MIC分别为30μg/ml、100μg/ml和100μg/ml;AF-DP对MCF-7乳腺癌细胞系显示出抗癌活性。扫描电子显微镜分析证实了细菌膜表面形成了孔洞和划痕。本研究结果表明,AF-DP作为一种具有抗菌活性的抗菌肽,有望成为新药研发的候选药物。

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