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循环成纤维细胞生长因子23全基因组关联研究的多性状分析确定了慢性肾脏病中HRG-HMGB1与心脏病之间新的网络相互作用。

Multi-trait Analysis of GWAS for circulating FGF23 Identifies Novel Network Interactions Between HRG-HMGB1 and Cardiac Disease in CKD.

作者信息

Perwad Farzana, Akwo Elvis A, Vartanian Nicholas, Suva Larrry J, Friedman Peter A, Robinson-Cohen Cassianne

机构信息

University of California San Francisco, San Francisco, CA.

Vanderbilt University Medical Center, Nashville, TN.

出版信息

medRxiv. 2024 Mar 6:2024.03.04.24303051. doi: 10.1101/2024.03.04.24303051.

Abstract

BACKGROUND

Genome-wide association studies (GWAS) have identified numerous genetic loci associated with mineral metabolism (MM) markers but have exclusively focused on single-trait analysis. In this study, we performed a multi-trait analysis of GWAS (MTAG) of MM, exploring overlapping genetic architecture between traits, to identify novel genetic associations for fibroblast growth factor 23 (FGF23).

METHODS

We applied MTAG to genetic variants common to GWAS of 5 genetically correlated MM markers (calcium, phosphorus, FGF23, 25-hydroxyvitamin D (25(OH)D) and parathyroid hormone (PTH)) in European-ancestry subjects. We integrated information from UKBioBank GWAS for blood levels for phosphate, 25(OH)D and calcium (n=366,484), and CHARGE GWAS for PTH (n=29,155) and FGF23 (n=16,624). We then used functional genomics to model interactive and dynamic networks to identify novel associations between genetic traits and circulating FGF23.

RESULTS

MTAG increased the effective sample size for all MM markers to n=50,325 for FGF23. After clumping, MTAG identified independent genome-wide significant SNPs for all traits, including 62 loci for FGF23. Many of these loci have not been previously reported in single-trait analyses. Through functional genomics we identified Histidine-rich glycoprotein () and high mobility group box 1() genes as master regulators of downstream canonical pathways associated with FGF23. HRG-HMGB1 network interactions were also highly enriched in left ventricular heart tissue of a cohort of deceased hemodialysis patients.

CONCLUSION

Our findings highlight the importance of MTAG analysis of MM markers to boost the number of genome-wide significant loci for FGF23 to identify novel genetic traits. Functional genomics revealed novel networks that inform unique cellular functions and identified as key master regulators of FGF23 and cardiovascular disease in CKD. Future studies will provide a deeper understanding of genetic signatures associated with FGF23 and its role in health and disease.

摘要

背景

全基因组关联研究(GWAS)已鉴定出众多与矿物质代谢(MM)标志物相关的基因位点,但均仅专注于单性状分析。在本研究中,我们对MM进行了多性状GWAS分析(MTAG),探索性状间重叠的遗传结构,以确定成纤维细胞生长因子23(FGF23)的新遗传关联。

方法

我们将MTAG应用于欧洲血统受试者中5种遗传相关MM标志物(钙、磷、FGF23、25-羟基维生素D(25(OH)D)和甲状旁腺激素(PTH))GWAS的常见遗传变异。我们整合了来自英国生物银行GWAS中磷酸盐、25(OH)D和钙血水平的信息(n = 366,484),以及CHARGE GWAS中PTH(n = 29,155)和FGF23(n = 16,624)的信息。然后我们使用功能基因组学来构建交互式和动态网络模型,以识别遗传性状与循环FGF23之间的新关联。

结果

MTAG将所有MM标志物的有效样本量增加至FGF23的n = 50,325。聚类后,MTAG鉴定出所有性状的独立全基因组显著单核苷酸多态性(SNP),包括FGF23的62个基因座。其中许多基因座在单性状分析中此前未被报道。通过功能基因组学,我们鉴定出富含组氨酸的糖蛋白(HRG)和高迁移率族蛋白B1(HMGB1)基因是与FGF23相关的下游经典途径的主要调节因子。HRG-HMGB1网络相互作用在一组已故血液透析患者的左心室心脏组织中也高度富集。

结论

我们的研究结果突出了对MM标志物进行MTAG分析对于增加FGF23全基因组显著基因座数量以识别新遗传性状的重要性。功能基因组学揭示了为独特细胞功能提供信息的新网络,并鉴定出HRG和HMGB1是CKD中FGF23和心血管疾病的关键主要调节因子。未来的研究将更深入地了解与FGF23相关的遗传特征及其在健康和疾病中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7baf/10942519/db621c6e3ac9/nihpp-2024.03.04.24303051v1-f0001.jpg

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