Suppr超能文献

中国西南部天南星科刺芋属植物叶绿体基因组的组装与分析:对保护和利用的启示

Assembly and analysis of the chloroplast genome of Engler & Gehrmann (Araceae) from Southwestern China: implications for conservation and utilization.

作者信息

Gao Yong, Yin Si

机构信息

College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, China.

出版信息

Mitochondrial DNA B Resour. 2024 Apr 3;9(4):452-456. doi: 10.1080/23802359.2024.2338550. eCollection 2024.

Abstract

Konjac glucomannan consists of D-mannose and D-glucose units and is a hydrocolloid obtained from the corm of species. Due to its bioactive properties, biodegradability, and hydrophilic ability, glucomannan is widely used in the fields of food, medicine, and industry. species have been cultivated as cash crops in many Asian countries. Engler & Gehrmann 1911 is naturally distributed in southwestern China, Laos, and northern Thailand. To help the genetic assessment and conservation of this species, the first chloroplast genome of was sequenced on the Illumina sequencing platform. We assembled the chloroplast genome using the software GetOrganelle and annotated the genome by Geseq and Cpgavas 2. The assembled chloroplast genome was 173,330 bp long, and the average GC content was 35% (GenBank accession number: PP072244). The chloroplast genome of contained one large single copy, one small single copy, and two inverted repeats, with lengths of 92,030 bp, 15,118 bp, 33,091 bp, and 33,091 bp, respectively. We successfully annotated 132 genes across the genome, which was consistent with other species. The phylogenetic tree indicates a sub-divergence in the genus with two main genetic groups detected among eight species. The two genetic groups should be treated as distinct evolutionarily significant units when making conservation strategies. Our study enriched the chloroplast genome resources of the genus and could help future phylogeographic studies, protection, and utilization of wild resources.

摘要

魔芋葡甘露聚糖由D-甘露糖和D-葡萄糖单元组成,是从魔芋属植物的球茎中获得的一种水胶体。由于其生物活性、生物可降解性和亲水能力,葡甘露聚糖在食品、医药和工业领域得到广泛应用。魔芋属植物在许多亚洲国家已作为经济作物种植。魔芋(Engler & Gehrmann 1911)自然分布于中国西南部、老挝和泰国北部。为了帮助对该物种进行遗传评估和保护,在Illumina测序平台上对魔芋的首个叶绿体基因组进行了测序。我们使用GetOrganelle软件组装叶绿体基因组,并通过Geseq和Cpgavas 2对基因组进行注释。组装后的叶绿体基因组长度为173,330 bp,平均GC含量为35%(GenBank登录号:PP072244)。魔芋的叶绿体基因组包含一个大单拷贝、一个小单拷贝和两个反向重复序列,长度分别为92,030 bp、15,118 bp、33,091 bp和33,091 bp。我们成功注释了全基因组中的132个基因,这与其他魔芋属物种一致。系统发育树表明魔芋属存在亚分化,在八个物种中检测到两个主要遗传组。在制定保护策略时,这两个遗传组应被视为不同的具有进化意义的单元。我们的研究丰富了魔芋属的叶绿体基因组资源,有助于未来的系统地理学研究、野生资源的保护和利用。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验