Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China.
Department of Neurosurgery, Affiliated Hangzhou First People's Hospital, School of Medicine, Westlake University, Hangzhou, Zhejiang, China.
Environ Toxicol. 2024 Dec;39(12):5250-5263. doi: 10.1002/tox.24398. Epub 2024 Aug 18.
Various studies have demonstrated that ubiquitin D (UBD) is overexpressed in different cancer types and may serve as a potential prognostic factor. However, additional research is necessary to establish the prognostic significance and possible role of UBD in glioma. Transcriptomic expression data from The Cancer Genome Atlas database (TCGA) and Chinese Glioma Genome Atlas (CGGA) were analyzed to identify UBD expression differences in tumor and normal tissues. The relative levels of UBD in glioma and normal tissues were determined using qRT-PCR and WB. Logistic regression analysis was performed to investigate the association between UBD expression and clinicopathological characteristics of glioma patients. To evaluate the diagnostic and prognostic predictive values of UBD, we used Kaplan-Meier survival curves, Cox regression analysis, diagnostic receiver operating characteristic (ROC) curves, and nomogram model. We also conducted wound healing assays, transwell assays, EdU assays, and colony formation assays to verify the UBD function. Gene ontology (GO) enrichment analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, as well as gene set enrichment analysis (GSEA), were employed to determine the functions of UBD. Finally, we performed the western blot assays to assess changes in EMT markers as well as p-PI3K, p-AKT, and p-mTOR expressions. Our study revealed a remarkable increase of UBD expression in glioma samples. Cox regression analysis demonstrated that high expression of UBD mRNA was an independent prognostic factor for overall survival (OS) in TCGA. ROC curve analysis showed that UBD expression levels could differentiate glioma from adjacent normal tissues accurately. Additionally, knockdown of UBD reduced the migration, invasion, and proliferation ability of glioma cells while UBD overexpression had the opposite effect. GSEA showed that the expression of UBD involved with various pathways including epithelial-mesenchymal transition (EMT), PI3K-AKT-mTOR signaling, P53 pathway, angiogenesis, inflammatory response, KRAS signaling, hypoxia, as well as TGF-β signaling. Furthermore, our findings suggest that UBD accelerates the activation of EMT and PI3K/AKT/mTOR pathway.
各种研究表明,泛素 D(UBD)在不同类型的癌症中过度表达,可能作为一个潜在的预后因素。然而,需要进一步的研究来确定 UBD 在神经胶质瘤中的预后意义和可能作用。分析了来自癌症基因组图谱数据库(TCGA)和中国脑胶质瘤基因组图谱(CGGA)的转录组表达数据,以鉴定肿瘤和正常组织中 UBD 表达的差异。使用 qRT-PCR 和 WB 测定 UBD 在神经胶质瘤和正常组织中的相对水平。进行逻辑回归分析,以研究 UBD 表达与神经胶质瘤患者临床病理特征之间的关系。为了评估 UBD 的诊断和预后预测价值,我们使用 Kaplan-Meier 生存曲线、Cox 回归分析、诊断接受者操作特征(ROC)曲线和列线图模型。我们还进行了伤口愈合试验、Transwell 试验、EdU 试验和集落形成试验,以验证 UBD 的功能。进行基因本体论(GO)富集分析、京都基因与基因组百科全书(KEGG)通路分析以及基因集富集分析(GSEA),以确定 UBD 的功能。最后,我们进行了 Western blot 分析,以评估 EMT 标志物以及 p-PI3K、p-AKT 和 p-mTOR 表达的变化。我们的研究表明 UBD 在神经胶质瘤样本中表达显著增加。Cox 回归分析表明,TCGA 中 UBD mRNA 的高表达是总生存期(OS)的独立预后因素。ROC 曲线分析表明,UBD 表达水平可以准确地区分神经胶质瘤与相邻正常组织。此外,UBD 的敲低降低了神经胶质瘤细胞的迁移、侵袭和增殖能力,而 UBD 的过表达则产生相反的效果。GSEA 表明 UBD 的表达涉及多种途径,包括上皮-间充质转化(EMT)、PI3K-AKT-mTOR 信号通路、P53 通路、血管生成、炎症反应、KRAS 信号通路、缺氧以及 TGF-β 信号通路。此外,我们的研究结果表明,UBD 加速 EMT 和 PI3K/AKT/mTOR 通路的激活。