South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
University of Chinese Academy of Sciences, Beijing, China.
Microbiol Spectr. 2024 Oct 3;12(10):e0053624. doi: 10.1128/spectrum.00536-24. Epub 2024 Aug 22.
Dinitrogen (N) fixation is a crucial source of bioavailable nitrogen in carbon-dominated cold seep systems. Previous studies have shown that diazotrophy is not necessarily dependent on sulfate-dependent anaerobic oxidation of methane for energy, and diverse catabolism can fuel the high-energy-demanding process in sediments. However, it remains unclear whether diazotroph can obtain energy by sulfur oxidation in sulfur-rich cold seep water column. Here, field investigations and experiments were conducted in Haima cold seep to examine the effects of diverse sources of dissolved organic matter (DOM) on N fixation, specifically containing sulfur, carbon, nitrogen, and phosphorus. We found that active N fixation occurred in the water column above the Haima cold seep, with the genus dominating the diazotroph community as revealed by gene using high-throughput sequencing. experiments showed an increased rate of N fixation (1.15- to 12.70-fold compared to that in control group) and a greater relative abundance of the genus following enrichment with sulfur-containing organic matter. Furthermore, metagenomic assembly and binning revealed that sp. carried genes related to N fixation () and sulfur compound oxidation ( and ), implying that the genus potentially serves as a multifunctional mediator for N fixation and sulfur cycling. Our results provide new insights regarding potential coupling mechanism associated with sulfur-driven N fixation in methane- and sulfide-rich environments.
N2 fixation is an important source of biologically available in carbon-dominated cold seep systems as little nitrogen is released by hydrocarbon seepage, thereby promoting biological productivity and the degradation of non-nitrogenous organic matter. Cold seeps are rich in diverse sources of dissolved organic matter (DOM) derived from the sinking of photosynthetic products in euphotic layer and the release of chemosynthesis products on the seafloor. However, it remains unclear whether N2 fixation is coupled to the metabolic processes of DOM, as determined by e.g., carbon, nitrogen, phosphorus, and sulfur content, for energy acquisition in sulfur-rich cold seeps. In this study, diazotroph community structure and its response to DOM compositions were revealed. Moreover, the metagenomics analysis suggested that genus plays a dominant role in potential coupling N2 fixation and sulfur oxidation. Our study highlighted that sulfur oxidation in deep-sea cold seeps may serve as an energy source to drive N2 fixation.
在以碳为主的冷渗系统中,氮气(N)固定是生物可利用氮的重要来源。先前的研究表明,固氮作用不一定依赖于硫酸盐依赖的甲烷厌氧氧化来获取能量,并且多种分解代谢可以为沉积物中高能量需求的过程提供燃料。然而,目前尚不清楚固氮生物是否可以通过富含硫的冷渗水中的硫氧化来获取能量。在这里,我们在海马冷渗区进行了实地调查和实验,以研究不同来源的溶解有机物(DOM)对 N 固定的影响,特别是含有硫、碳、氮和磷的 DOM。我们发现,在海马冷渗区上方的水柱中发生了活跃的 N 固定,高通量测序结果显示, 属是优势固氮生物。 实验表明,与对照组相比,含硫有机物的富集使 N 固定速率增加了 1.15-12.70 倍, 属的相对丰度增加。此外,宏基因组组装和分类揭示了 属携带与 N 固定()和硫化合物氧化(和)相关的基因,这意味着该属可能是 N 固定和硫循环的多功能介质。我们的研究结果为甲烷和硫化物丰富环境中与硫驱动的 N 固定相关的潜在耦合机制提供了新的见解。
在以碳为主的冷渗系统中,氮固定是生物可利用氮的重要来源,因为烃类渗漏很少释放氮,从而促进了生物生产力和非氮有机物质的降解。冷渗区富含各种来源的溶解有机物(DOM),这些有机物来自于真光层下沉的光合作用产物和海底化能合成产物的释放。然而,目前尚不清楚氮固定是否与 DOM 的代谢过程耦合,例如通过碳、氮、磷和硫的含量来获取能量,在富含硫的冷渗区中。在这项研究中,揭示了固氮生物群落结构及其对 DOM 组成的响应。此外,宏基因组分析表明, 属在潜在的耦合氮固定和硫氧化中发挥主导作用。我们的研究强调了深海冷渗区的硫氧化可能作为一种能量来源来驱动氮固定。