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玉米长链酰基辅酶 A 合成酶的全基因组鉴定和特征分析及其在不同组织中的表达谱和对多种非生物胁迫的响应。

Genome-Wide Identification and Characterization of Maize Long-Chain Acyl-CoA Synthetases and Their Expression Profiles in Different Tissues and in Response to Multiple Abiotic Stresses.

机构信息

Maize Research Institute, Shandong Academy of Agricultural Sciences, Jinan 250100, China.

School of Agriculture, Ludong University, Yantai 264001, China.

出版信息

Genes (Basel). 2024 Jul 25;15(8):983. doi: 10.3390/genes15080983.

Abstract

Long-chain acyl-CoA synthetases (LACSs) are essential enzymes that activate free fatty acids to fatty acyl-CoA thioesters, playing key roles in fatty acid (FA) catabolism, lipid synthesis and storage, epidermal wax synthesis, and stress tolerance. Despite their importance, comprehensive information about genes in maize, a primary food crop, remains scarce. In the present work, eleven maize genes were identified and mapped across five chromosomes. Three pairs of segmentally duplicated genes were detected in the maize gene family, which underwent significant purifying selection (Ka/Ks < 1). Subsequently, phylogenetic analysis indicated that genes were divided into four subclasses, as supported by highly conserved motifs and gene structures. On the basis of the PlantCARE database, analysis of the promoter regions revealed various cis-regulatory elements related to tissue-specific expression, hormonal regulation, and abiotic stress response. RT-qPCR analysis showed that genes exhibit tissue-specific expression patterns and respond to diverse abiotic stresses including drought and salt, as well as phytohormone abscisic acid. Furthermore, using the STRING database, several proteins involved in fatty acid and complex lipid synthesis were identified to be the potential interaction partners of ZmLACS proteins, which was also confirmed by the yeast two-hybrid (Y2H) assay, enhancing our understanding of wax biosynthesis and regulatory mechanisms in response to abiotic stresses in maize. These findings provide a comprehensive understanding of genes and offer a theoretical foundation for future research on the biological functions of genes in maize environmental adaptability.

摘要

长链酰基辅酶 A 合成酶(LACSs)是激活游离脂肪酸生成脂肪酸酰基辅酶 A 硫酯的必需酶,在脂肪酸(FA)分解代谢、脂质合成和储存、表皮蜡合成以及应激耐受中发挥关键作用。尽管它们很重要,但有关主要粮食作物玉米中基因的全面信息仍然很少。在本工作中,鉴定并在五条染色体上定位了 11 个玉米基因。在玉米基因家族中检测到三对片段重复基因,它们经历了显著的纯化选择(Ka/Ks < 1)。随后,系统发育分析表明,基因被分为四个亚类,这得到了高度保守基序和基因结构的支持。基于 PlantCARE 数据库,对启动子区的分析揭示了各种与组织特异性表达、激素调节和非生物胁迫响应相关的顺式调控元件。RT-qPCR 分析表明,基因表现出组织特异性表达模式,并对多种非生物胁迫如干旱和盐胁迫以及植物激素脱落酸做出响应。此外,使用 STRING 数据库,鉴定了几种参与脂肪酸和复合脂质合成的蛋白质是 ZmLACS 蛋白的潜在互作伙伴,酵母双杂交(Y2H)实验也证实了这一点,这增强了我们对玉米中蜡生物合成和应对非生物胁迫的调控机制的理解。这些发现提供了对基因的全面了解,并为未来研究玉米环境适应性中基因的生物学功能提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e20/11354158/bb1e904cf3bb/genes-15-00983-g001.jpg

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