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《序列编码下的原核生物名称验证的选择和考虑因素》

Options and considerations for validation of prokaryotic names under the SeqCode.

机构信息

Department of Biochemistry, Genetics and Microbiology, and Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa.

Department of Microbiology and Digital Science Center (DiSC), University of Innsbruck, Innsbruck, Austria.

出版信息

Syst Appl Microbiol. 2024 Nov;47(6):126554. doi: 10.1016/j.syapm.2024.126554. Epub 2024 Sep 19.

Abstract

Stable taxon names for Bacteria and Archaea are essential for capturing and documenting prokaryotic diversity. They are also crucial for scientific communication, effective accumulation of biological data related to the taxon names and for developing a comprehensive understanding of prokaryotic evolution. However, after more than a hundred years, taxonomists have succeeded in valid publication of only around 30 000 species names, based mostly on pure cultures under the International Code of Nomenclature of Prokaryotes (ICNP), out of the millions estimated to reside in the biosphere. The vast majority of prokaryotic species have not been cultured and are becoming increasingly known to us via culture-independent sequence-based approaches. Until recently, such taxa could only be addressed nomenclaturally via provisional names such as Candidatus or alphanumeric identifiers. Here, we present options and considerations to facilitate validation of names for these taxa using the recently established Code of Nomenclature of Prokaryotes Described from Sequence Data (SeqCode). Community engagement and participation of relevant taxon specialists are critical and encouraged for the success of endeavours to formally name the uncultured majority.

摘要

稳定的细菌和古菌分类群名称对于捕获和记录原核生物多样性至关重要。它们对于科学交流、有效积累与分类群名称相关的生物数据以及全面了解原核生物进化也至关重要。然而,经过一百多年的时间,分类学家仅成功地基于国际原核生物命名法规(ICNP)下的纯培养物,对估计居住在生物圈中的数百万种微生物中的约 30000 个种名进行了有效发表。绝大多数原核生物物种尚未培养,并且通过非培养的基于序列的方法越来越为我们所了解。直到最近,这些分类群只能通过临时名称(如候选名称)或字母数字标识符来进行命名。在这里,我们提出了一些选择和考虑因素,以利用最近建立的基于序列数据的《原核生物命名法规》(SeqCode)来促进这些分类群名称的验证。社区参与和相关分类群专家的参与对于成功地对未培养的大多数进行正式命名至关重要。

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