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CRISPR/Cas 系统和抗 CRISPR 蛋白的最新进展:创新应用以改善基因组编辑策略。

Current Updates of CRISPR/Cas System and Anti-CRISPR Proteins: Innovative Applications to Improve the Genome Editing Strategies.

机构信息

Department of Medical Laboratories, College of Applied Medical Sciences, Qassim University, Buraydah, Saudi Arabia.

General Administration for Infectious Disease Control, Ministry of Health, Riyadh 12382, Saudi Arabia.

出版信息

Int J Nanomedicine. 2024 Oct 9;19:10185-10212. doi: 10.2147/IJN.S479068. eCollection 2024.

Abstract

The Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-associated sequence (CRISPR/Cas) system is a cutting-edge genome-editing tool employed to explore the functions of normal and disease-related genes. The CRISPR/Cas system has a remarkable diversity in the composition and architecture of genomic loci and Cas protein sequences. Owing to its excellent efficiency and specificity, this system adds an outstanding dimension to biomedical research on genetic manipulation of eukaryotic cells. However, safe, efficient, and specific delivery of this system to target cells and tissues and their off-target effects are considered critical bottlenecks for the therapeutic applications. Recently discovered anti-CRISPR proteins (Acr) play a significant role in limiting the effects of this system. Acrs are relatively small proteins that are highly specific to CRISPR variants and exhibit remarkable structural diversity. The in silico approaches, crystallography, and cryo-electron microscopy play significant roles in elucidating the mechanisms of action of Acrs. Acrs block the CRISPR/Cas system mainly by employing four mechanisms: CRISPR/Cas complex assembly interruption, target-binding interference, target cleavage prevention, and degradation of cyclic oligonucleotide signaling molecules. Engineered CRISPR/Cas systems are frequently used in gene therapy, diagnostics, and functional genomics. Understanding the molecular mechanisms underlying Acr action may help in the safe and effective use of CRISPR/Cas tools for genetic modification, particularly in the context of medicine. Thus, attempts to regulate prokaryotic CRISPR/Cas surveillance complexes will advance the development of antimicrobial drugs and treatment of human diseases. In this review, recent updates on CRISPR/Cas systems, especially CRISPR/Cas9 and Acrs, and their novel mechanistic insights are elaborated. In addition, the role of Acrs in the novel applications of CRISPP/Cas biotechnology for precise genome editing and other applications is discussed.

摘要

CRISPR/Cas 系统是一种前沿的基因组编辑工具,用于探索正常和与疾病相关基因的功能。CRISPR/Cas 系统在基因组位点和 Cas 蛋白序列的组成和结构上具有显著的多样性。由于其高效性和特异性,该系统为真核细胞遗传操作的生物医学研究增添了一个出色的维度。然而,将该系统安全、高效且特异性地递送到靶细胞和组织及其脱靶效应被认为是治疗应用的关键瓶颈。最近发现的抗 CRISPR 蛋白(Acr)在限制该系统的作用方面发挥了重要作用。Acr 是相对较小的蛋白质,对 CRISPR 变体具有高度特异性,并表现出显著的结构多样性。计算方法、晶体学和低温电子显微镜在阐明 Acr 作用机制方面发挥了重要作用。Acr 主要通过以下四种机制阻断 CRISPR/Cas 系统:CRISPR/Cas 复合物组装中断、靶标结合干扰、靶标切割预防和环状寡核苷酸信号分子的降解。经过工程改造的 CRISPR/Cas 系统常用于基因治疗、诊断和功能基因组学。了解 Acr 作用的分子机制可能有助于安全有效地使用 CRISPR/Cas 工具进行基因修饰,特别是在医学领域。因此,尝试调节原核 CRISPR/Cas 监控复合物将推进抗菌药物的开发和人类疾病的治疗。在这篇综述中,详细阐述了 CRISPR/Cas 系统(特别是 CRISPR/Cas9 和 Acrs)的最新进展及其新的机制见解。此外,还讨论了 Acrs 在 CRISPP/Cas 生物技术的新型应用中的作用,用于精确基因组编辑和其他应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96c0/11471075/d41a20dc5c23/IJN-19-10185-g0001.jpg

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