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通过计算和实验研究发现流感病毒神经氨酸酶抑制剂

Discovering Influenza Virus Neuraminidase Inhibitors via Computational and Experimental Studies.

作者信息

Nguyen Trung Hai, Anh Pham Ngoc Quynh, Thai Quynh Mai, Vu Van V, Ngo Son Tung, Horng Jim-Tong

机构信息

Laboratory of Biophysics, Institute for Advanced Study in Technology, Ton Duc Thang University, Ho Chi Minh City 72915, Vietnam.

Faculty of Pharmacy, Ton Duc Thang University, Ho Chi Minh City 72915, Vietnam.

出版信息

ACS Omega. 2024 Nov 25;9(49):48505-48511. doi: 10.1021/acsomega.4c07194. eCollection 2024 Dec 10.

Abstract

Influenza A and B viruses spread out worldwide, causing several global concerns. Discovering neuraminidase inhibitors to prevent influenza A and B viruses is thus of great interest. In this work, a machine learning model was trained and tested to evaluate the ligand-binding affinity to neuraminidase. The model was then used to predict the binding affinity of compounds from the CHEMBL database, which is a manually curated database of bioactive molecules with drug-like properties. The physical insights into the binding process of ligands to neuraminidase were clarified via molecular docking and molecular dynamics simulations. Experimental investigation on enzymatic activity validated our computational results and suggested that 2 compounds were potential inhibitors of neuraminidase of the influenza A and B viruses.

摘要

甲型和乙型流感病毒在全球范围内传播,引发了诸多全球关注的问题。因此,发现神经氨酸酶抑制剂以预防甲型和乙型流感病毒备受关注。在这项工作中,训练并测试了一个机器学习模型,以评估配体与神经氨酸酶的结合亲和力。然后,该模型被用于预测来自CHEMBL数据库的化合物的结合亲和力,CHEMBL数据库是一个经过人工整理的具有类药物性质的生物活性分子数据库。通过分子对接和分子动力学模拟,阐明了配体与神经氨酸酶结合过程的物理见解。对酶活性的实验研究验证了我们的计算结果,并表明有2种化合物是甲型和乙型流感病毒神经氨酸酶的潜在抑制剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1674/11635487/0551321d5338/ao4c07194_0001.jpg

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