Kent Alexandra D, Robins Jacob G, Knudson Isaac J, Vance Jessica T, Solivan Alexander C, Hamlish Noah X, Fitzgerald Katelyn A, Schepartz Alanna, Miller Scott J, Cate Jamie H D
Department of Chemistry, University of California, Berkeley, California 94720, United States.
Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States.
ACS Cent Sci. 2025 Jan 30;11(3):404-412. doi: 10.1021/acscentsci.4c01698. eCollection 2025 Mar 26.
Thioesters are critical chemical intermediates in numerous extant biochemical reactions and are invoked as key reagents during prebiotic peptide synthesis on an evolving Earth. Here we asked if a thioester could replace the native oxo-ester in acyl-tRNA substrates during protein biosynthesis by the ribosome. We prepared 3'-thio-3'-deoxyadenosine triphosphate in 10 steps from xylose and demonstrated that it is an effective substrate for the CCA-adding enzyme, which appends 3'-thio-3'-deoxyadenosine to truncated tRNAs ending with 3'-CC. Using a variety of aminoacyl-tRNA synthetases, flexizymes, or a direct thioester exchange reaction, we prepared a suite of 3'-thio-tRNAs acylated with α- and non-α-amino acids. All were recognized and utilized by wild-type ribosomes during translation reactions to generate oligopeptides in yields commensurate with native oxo-ester tRNAs. These results indicate that thioester intermediates widely used in Nature can be co-opted to support the incorporation of natural α-amino acids as well as noncanonical monomers by the extant translational machinery for sequence-defined polymer synthesis.
硫酯是众多现存生化反应中的关键化学中间体,在不断演化的地球上,它们被认为是益生元肽合成过程中的关键试剂。在这里,我们探讨了在核糖体进行蛋白质生物合成过程中,硫酯是否能够取代酰基 - tRNA底物中的天然氧酯。我们以木糖为原料,经过10步反应制备了3'-硫代-3'-脱氧腺苷三磷酸,并证明它是添加CCA酶的有效底物,该酶能将3'-硫代-3'-脱氧腺苷添加到以3'-CC结尾的截短tRNA上。我们使用多种氨酰 - tRNA合成酶、柔性酶或直接硫酯交换反应,制备了一系列用α - 和非α - 氨基酸酰化的3'-硫代 - tRNA。在翻译反应过程中,所有这些都被野生型核糖体识别并利用,以生成与天然氧酯tRNA产量相当的寡肽。这些结果表明,自然界中广泛使用的硫酯中间体可以被现有的翻译机制用于支持天然α - 氨基酸以及非标准单体的掺入,以进行序列定义的聚合物合成。