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基于酚类的蛋白酪氨酸磷酸酶1B变构抑制:开启代谢紊乱的新治疗潜力

Phenolic-based allosteric inhibition of PTP1B: unlocking new therapeutic potential for metabolic disorders.

作者信息

Kamel Emadeldin M, Allam Ahmed A, Rudayni Hassan A, Alshabrmi Fahad M, Aba Alkhayl Faris F, Lamsabhi Al Mokhtar

机构信息

Chemistry Department, Faculty of Science, Beni-Suef University, Beni-Suef, 62514, Egypt.

Department of Biology, College of Science, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh, 11623, Saudi Arabia.

出版信息

J Comput Aided Mol Des. 2025 Jun 24;39(1):35. doi: 10.1007/s10822-025-00616-1.

Abstract

Protein tyrosine phosphatase 1B (PTP1B) plays a critical role in insulin signaling and is associated with various metabolic diseases, including type 2 diabetes. In this study, we investigated the inhibitory potential of five phenolic compounds isolated from Tamarix aphylla against PTP1B. Using molecular docking, molecular dynamics (MD) simulations, and ADMET analysis, we assessed the binding modes, stability, and pharmacokinetic properties of these compounds. The findings from in silico studies were validated by experimental in vitro enzyme activity assays, which showed that 3,3'-di-O-methylellagic acid and scutellarein exhibited the strongest inhibitory activities with IC values of 3.77 ± 0.15 µM and 3.08 ± 0.36 µM, respectively. Both compounds were found to inhibit PTP1B via non-competitive inhibition, with K values of 3.90 µM and 3.40 µM. The free energy landscape (FEL) analysis confirmed stable binding conformations, while various MD parameter analyses indicated minimal structural perturbations in the enzyme, suggesting enhanced stability of the enzyme-ligand complexes. MM/PBSA calculations further supported the strong binding affinities of these compounds, highlighting their potential as PTP1B inhibitors. ADMET profiling indicated favorable pharmacokinetic properties, including good bioavailability and low toxicity risks. This study provides compelling evidence for the potential of phenolic compounds from Tamarix aphylla as therapeutic agents for PTP1B inhibition, offering new opportunities for the treatment of metabolic disorders.

摘要

蛋白酪氨酸磷酸酶1B(PTP1B)在胰岛素信号传导中起关键作用,并与包括2型糖尿病在内的各种代谢疾病相关。在本研究中,我们研究了从无叶柽柳中分离出的五种酚类化合物对PTP1B的抑制潜力。通过分子对接、分子动力学(MD)模拟和ADMET分析,我们评估了这些化合物的结合模式、稳定性和药代动力学性质。计算机模拟研究的结果通过体外酶活性实验得到验证,结果表明3,3'-二-O-甲基鞣花酸和黄芩苷表现出最强的抑制活性,IC值分别为3.77±0.15μM和3.08±0.36μM。发现这两种化合物均通过非竞争性抑制作用抑制PTP1B,K值分别为3.90μM和3.40μM。自由能景观(FEL)分析证实了稳定的结合构象,而各种MD参数分析表明酶的结构扰动最小,表明酶-配体复合物的稳定性增强。MM/PBSA计算进一步支持了这些化合物的强结合亲和力,突出了它们作为PTP1B抑制剂的潜力。ADMET分析表明其具有良好的药代动力学性质,包括良好的生物利用度和低毒性风险。本研究为无叶柽柳中的酚类化合物作为PTP1B抑制的治疗剂的潜力提供了有力证据,为代谢紊乱的治疗提供了新的机会。

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