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15年研究的主要发现:一种超越内生菌的普通细菌。

Key findings from 15 years of research: a generalist bacterium beyond endophytes.

作者信息

Chin Hong Soon, Ravi Varadharajulu Narendrakumar, Teo Kah Cheng, Cheong Peter Chiew Hing, Tang Sen-Lin

机构信息

Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu, Taiwan.

Viroxy Sdn Bhd, Kuala Lumpur, Malaysia.

出版信息

Appl Environ Microbiol. 2025 Aug 20;91(8):e0247924. doi: 10.1128/aem.02479-24. Epub 2025 Jul 10.

Abstract

Since the discovery of in 2010, research on (MGBs) has stagnated. Although laboratories worldwide have isolated various MGB strains and deposited their 16S rDNA sequences in the NCBI database, a limited understanding of MGBs has resulted in only a few publications from these collections. Recent advancements in metagenomic technology have revealed the presence of MGBs in a broader range of habitats. Most microbiomes exhibit low MGB abundance (typically <1%). Even in environments with higher prevalence, such as salt-tolerant aerobic granular sludge (75%), the gut of superworms fed with polyurethane (22%), or fermented foods like mandai (16%), the functional roles of MGBs remain unclear. Through meticulous curation of publications and data from MicrobeAtlas and AMIBASE, MGBs can be classified as free living, endophytic, or zoonotic. Recent evidence suggests their presence in food sources and potential interactions with humans. Current studies confirm the coexistence of MGBs with humans. This review underscores the phenotypic features and genomic foundations of MGBs, highlighting attributes such as endophytic behavior, diverse metabolite utilization, tolerance to salinity and pH, metal homeostasis, biofilm formation, and bioremediation potential. Insights are derived from the analysis of four MGB genomes deposited in NCBI since 2014, along with three newly reported genomes in 2024. Experimental and genetic evidence suggests that MGBs act as "generalist microbes" capable of thriving in diverse nutrient sources and harsh environments. This review elucidates prospective research trajectories and highlights numerous potential commercial applications of MGBs, emphasizing the need for further investigation into their roles and benefits.

摘要

自2010年发现[具体内容缺失]以来,对[具体内容缺失](MGBs)的研究一直停滞不前。尽管全球各地的实验室已经分离出各种MGB菌株,并将它们的16S rDNA序列存入了NCBI数据库,但由于对MGBs的了解有限,这些菌株的相关出版物寥寥无几。宏基因组技术的最新进展揭示了MGBs在更广泛的栖息地中的存在。大多数微生物群落中MGBs的丰度较低(通常<1%)。即使在MGBs患病率较高的环境中,如耐盐好氧颗粒污泥(75%)、以聚氨酯为食的黄粉虫肠道(22%)或像泡菜(16%)这样的发酵食品中,MGBs的功能作用仍不清楚。通过精心整理来自MicrobeAtlas和AMIBASE的出版物和数据,MGBs可分为自由生活型、内生型或人畜共患病型。最近的证据表明它们存在于食物来源中,并可能与人类相互作用。目前的研究证实了MGBs与人类共存。本综述强调了MGBs的表型特征和基因组基础,突出了诸如内生行为、多种代谢物利用、耐盐性和pH值、金属稳态、生物膜形成以及生物修复潜力等特性。相关见解来自于对2014年以来存入NCBI的四个MGB基因组的分析,以及2024年新报道的三个基因组。实验和遗传证据表明,MGBs作为“通才微生物”,能够在各种营养源和恶劣环境中茁壮成长。本综述阐明了未来的研究方向,并强调了MGBs的众多潜在商业应用,强调有必要进一步研究它们的作用和益处。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3462/12366330/2c8996ab0fe9/aem.02479-24.f001.jpg

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