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带有基团转移配体的超小型化学遗传标签。

Ultrasmall chemogenetic tags with group-transfer ligands.

作者信息

Vedagopuram Sreekanth, Sindi Shaimaa, Chaudhary Santosh K, Pergu Rajaiah, Singh Prashant, Karaj Endri, Fung Jeffrey E, Deb Arghya, DeCarlo Stephan J, Mercer Jaron A M, Yamada Kei, Rodriguez Diego, Liu David R, Choudhary Amit

机构信息

Chemical Biology and Therapeutics Science, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.

These authors contributed equally to this work and are listed in reverse alphabetical order. They will put their name first in their curriculum vitae citations or elsewhere.

出版信息

bioRxiv. 2025 May 10:2025.05.10.653252. doi: 10.1101/2025.05.10.653252.

Abstract

Chemogenetic tags are valuable tools for studying functions of a given protein-of-interest (POI) lacking small-molecule ligands, but most tags are too large for several POIs. Here, we report two ultrasmall chemogenetic tags (mgTag and cTag) of 36 and 50 amino acids (aa) that, to the best of our knowledge, are the smallest reported. These tags exhibit -type reactivity with their ligands to append any moiety of interest to the tag. cTag utilizes an engineered C1 domain-bearing cysteine that undergoes group-transfer reaction with its ligand. Likewise, mgTag utilizes an engineered zinc-finger domain-bearing cysteine that undergoes group-transfer reaction with its molecular-glue ligand in the presence of cereblon (CRBN). We applied these tags in the context of cell signaling and proximity induction. While the fusion of HaloTag (297 aa) to the KRAS (188 aa) disrupted its ability to activate the growth-signaling pathway, fusion of mgTag or cTag did not. Group-transfer of BRD4 binder to tags appended to Abelson kinase (ABL) induced proximity between ABL and BRD4, resulting in the latter's phosphorylation. Deletion of the -type reactivity reduced phosphorylation levels, suggesting that proximity-inducing chimeras with group-transfer design may be more efficacious in certain scenarios. We envision these ultrasmall tags to have wide-ranging applications, including in basic science, biotechnology, and medicine.

摘要

化学遗传标签是研究缺乏小分子配体的特定目标蛋白(POI)功能的宝贵工具,但大多数标签对于几种POI来说太大了。在此,我们报告了两个分别由36和50个氨基酸(aa)组成的超小化学遗传标签(mgTag和cTag),据我们所知,它们是已报道的最小的标签。这些标签与其配体表现出 - 型反应性,可将任何感兴趣的部分连接到标签上。cTag利用一个经过工程改造的带有C1结构域的半胱氨酸,它与其配体发生基团转移反应。同样,mgTag利用一个经过工程改造的带有锌指结构域的半胱氨酸,它在存在cereblon(CRBN)的情况下与其分子胶配体发生基团转移反应。我们在细胞信号传导和邻近诱导的背景下应用了这些标签。虽然将HaloTag(297个氨基酸)与KRAS(188个氨基酸)融合会破坏其激活生长信号通路的能力,但mgTag或cTag的融合则不会。将BRD4结合剂基团转移到与阿贝尔逊激酶(ABL)相连的标签上,诱导了ABL和BRD4之间的邻近,导致后者磷酸化。 - 型反应性的缺失降低了磷酸化水平, 这表明具有基团转移设计的邻近诱导嵌合体在某些情况下可能更有效。我们设想这些超小标签将有广泛的应用,包括在基础科学、生物技术和医学领域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae85/12247866/1abc6fa20276/nihpp-2025.05.10.653252v1-f0002.jpg

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