Zamudio Roxana, Osman Karen, Pike Rachel, Chaudhry Aiysha, Meunier Danièle, Stoesser Nicole, Stretch Rebecca, Turton Jane F, Williams David, Hopkins Katie L
AMR and HCAI Division, UK Health Security Agency (UKHSA), London, UK.
Antimicrobial Resistance and Healthcare Associated Infections (AMRHAI) Reference Unit, Public Health Microbiology - Reference Microbiology Division, UK Health Security Agency (UKHSA), London, UK.
Microb Genom. 2025 Sep;11(9). doi: 10.1099/mgen.0.001502.
Carbapenem-resistant are a significant threat to global public health. Here, we characterize -positive (=8) and (=3) isolates from human clinical samples collected between 2021 and 2024 in the UK. Whole-genome sequencing (WGS) was used to generate data, and a phylogenetic tree inferred from SNPs filtered for recombination was constructed to assess the genomic relatedness among the isolates. To provide an international context, we included publicly available genomes. Short-read mapping to a reference genome enabled reconstruction of the genomic neighbourhood around . Minimum inhibitory concentration (MIC) determination was performed using broth microdilution and results interpreted using the European Committee on Antimicrobial Susceptibility Testing (EUCAST) guidelines. UK isolates belonged to ST142 and formed a sub-clade descending from an ancestral cluster of French isolates with relatively few SNPs between them (9-39). ST38 isolates harboured and showed close genetic relatedness (12-15 SNPs) among themselves. In , was associated with transposon Tn, while harboured a novel composite transposon, designated Tn, bordered by two copies of IS and with three copies of . was integrated into the chromosome in all isolates. All isolates were resistant to amoxicillin/clavulanic acid (>32 mg l) and with meropenem MICs above the EUCAST screening cut-off (0.5-1 mg l). In conclusion, UK -positive isolates belong to the same clonal lineage (ST142) previously reported in Belgium, Germany, Switzerland and France, suggesting introduction of this lineage into the UK. This is the first report of an ST38 lineage with chromosomally encoded located within a novel transposon Tn. WGS plays an important role in identifying the mechanism(s) of transmission of emerging carbapenemase genes.
耐碳青霉烯类细菌对全球公共卫生构成重大威胁。在此,我们对2021年至2024年期间在英国收集的人类临床样本中的8株碳青霉烯酶阳性菌株和3株阴性菌株进行了特征分析。使用全基因组测序(WGS)生成数据,并构建了基于经重组过滤的单核苷酸多态性(SNP)推断的系统发育树,以评估分离株之间的基因组相关性。为了提供国际背景信息,我们纳入了公开可用的基因组。通过将短读长映射到参考基因组,能够重建blaOXA-48基因周围的基因组邻域。使用肉汤微量稀释法测定最低抑菌浓度(MIC),并根据欧洲抗菌药物敏感性试验委员会(EUCAST)指南解释结果。英国的blaOXA-48阳性菌株属于ST142,形成了一个从法国分离株的祖先簇衍生而来的亚分支,它们之间的SNP相对较少(9 - 39个)。ST38分离株携带blaCTX-M-15,并且彼此之间显示出密切的遗传相关性(12 - 15个SNP)。在blaOXA-48中,它与转座子Tn2009相关联,而blaCTX-M-15则携带一种新型复合转座子,命名为Tn6532,由两个IS26拷贝界定,并带有三个blaCTX-M-15拷贝。blaOXA-48在所有分离株中均整合到染色体上。所有分离株,对阿莫西林/克拉维酸耐药(>32 mg/L),美罗培南的MIC,高于EUCAST筛查阈值(0.5 - 1 mg/L)。总之,英国,blaOXA-48阳性分离株属于先前在比利时、德国、瑞士和法国报道的同一克隆,表明该克隆已传入英国。这是关于携带位于新型转,座,子Tn6532内的染色体编码blaCTX-M-15的ST38克隆的首次报道。,WGS在识别新出现的碳青霉烯酶基因的传播机制,方面发挥着重要作用。