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内分泌干扰组学——一种开源预测工具,通过核受体结合来评估内分泌干扰潜力。

Endocrine disruptome--an open source prediction tool for assessing endocrine disruption potential through nuclear receptor binding.

机构信息

Faculty of Pharmacy, University of Ljubljana , Aškerčeva 7, 1000 Ljubljana, Slovenia.

出版信息

J Chem Inf Model. 2014 Apr 28;54(4):1254-67. doi: 10.1021/ci400649p. Epub 2014 Apr 2.

Abstract

Predicting the endocrine disruption potential of compounds is a daunting but essential task. Here we report a new tool for this purpose that we have termed Endocrine Disruptome. It is a free and simple-to-use Web service that runs on an open source platform called Docking interface for Target Systems (DoTS). The molecular docking is handled via AutoDock Vina. Compounds are docked to 18 integrated and well-validated crystal structures of 14 different human nuclear receptors: androgen receptor; estrogen receptors α and β; glucocorticoid receptor; liver X receptors α and β; mineralocorticoid receptor; peroxisome proliferator activated receptors α, β/δ, and γ; progesterone receptor; retinoid X receptor α; and thyroid receptors α and β. Endocrine Disruptome is free of charge and available at http://endocrinedisruptome.ki.si.

摘要

预测化合物的内分泌干扰潜力是一项艰巨但必不可少的任务。在这里,我们报告了一种用于此目的的新工具,我们将其称为内分泌干扰组。它是一个免费的、简单易用的 Web 服务,运行在一个名为 Docking interface for Target Systems (DoTS) 的开源平台上。分子对接通过 AutoDock Vina 进行。将化合物对接至 18 种整合且经过充分验证的 14 种不同人类核受体的晶体结构:雄激素受体;雌激素受体 α 和 β;糖皮质激素受体;肝 X 受体 α 和 β;盐皮质激素受体;过氧化物酶体增殖物激活受体 α、β/δ 和 γ;孕激素受体;视黄酸受体 α;以及甲状腺受体 α 和 β。内分泌干扰组是免费的,并可在 http://endocrinedisruptome.ki.si 上获得。

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