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膜翅目昆虫的基因组。

Genomes of the Hymenoptera.

机构信息

Pollinating Insect-biology, Management, Systematics Research Unit, USDA-ARS, Logan, UT 84322, United States.

Bee Research Laboratory, USDA-ARS, Beltsville, MD 20705, United States.

出版信息

Curr Opin Insect Sci. 2018 Feb;25:65-75. doi: 10.1016/j.cois.2017.11.008. Epub 2017 Nov 22.

Abstract

Hymenoptera is the second-most sequenced arthropod order, with 52 publically archived genomes (71 with ants, reviewed elsewhere), however these genomes do not capture the breadth of this very diverse order (Figure 1, Table 1). These sequenced genomes represent only 15 of the 97 extant families. Although at least 55 other genomes are in progress in an additional 11 families (see Table 2), stinging wasps represent 35 (67%) of the available and 42 (76%) of the in progress genomes. A more comprehensive catalog of hymenopteran genomes is needed for research into the evolutionary processes underlying the expansive diversity in terms of ecology, behavior, and physiological traits within this group. Additional sequencing is needed to generate an assembly for even 0.05% of the estimated 1 million hymenopteran species, and we recommend premier level assemblies for at least 0.1% of the >150,000 named species dispersed across the order. Given the haplodiploid sex determination in Hymenoptera, haploid male sequencing will help minimize genome assembly issues to enable higher quality genome assemblies.

摘要

膜翅目是第二个测序最多的节肢动物目,有 52 个公开存档的基因组(71 个有蚂蚁,其他地方有综述),然而这些基因组并没有涵盖这个非常多样化的目(图 1,表 1)。这些已测序的基因组仅代表现存的 97 个科中的 15 个。尽管在另外 11 个科中至少有 55 个其他基因组正在进行中(见表 2),但蛰刺蜂代表了已有的 42 个(76%)和正在进行中的 35 个(67%)基因组。为了研究这个组内生态、行为和生理特征广泛多样性的进化过程,需要更全面的膜翅目基因组目录。需要进行额外的测序,以便为估计的 100 万种膜翅目物种中的 0.05%甚至生成一个组装,我们建议对超过 15 万种已命名物种中的至少 0.1%进行主要水平的组装。鉴于膜翅目中的单倍体性决定,单倍体雄性测序将有助于最小化基因组组装问题,以实现更高质量的基因组组装。

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