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高精度电化学测量表明,从电极结合的 DNA 进行电子转移的鸟嘌呤、错配和长度依赖性与接触介导的机制一致。

High-Precision Electrochemical Measurements of the Guanine-, Mismatch-, and Length-Dependence of Electron Transfer from Electrode-Bound DNA Are Consistent with a Contact-Mediated Mechanism.

机构信息

Department of Chemistry and Biochemistry , University of California Santa Barbara , Santa Barbara , California 93106 , United States.

Center for Bioengineering , University of California Santa Barbara , Santa Barbara , California 93106 , United States.

出版信息

J Am Chem Soc. 2019 Jan 23;141(3):1304-1311. doi: 10.1021/jacs.8b11341. Epub 2019 Jan 11.

Abstract

Despite 25 years' effort, serious questions remain regarding the mechanism(s) underlying electron transfer through (or from) electrode-bound double-stranded DNA. In part this is because a control experiment regarding the putatively critical role of guanine bases in the most widely proposed transport mechanism (hopping from guanine to guanine through the π-stack) appears to be lacking from the prior literature. In response, we have employed chronoamperometry, which allows for high-precision determination of electron transfer rates, to characterize transfer to a redox reporter appended onto electrode-bound DNA duplexes. Specifically, we have measured the effects of guanines and base mismatches on the electron transfer rate associated with such constructs. Upon doing so, we find that, counter to prior reports, the transfer rate is, to within relatively tight experimental confidence intervals, unaffected by either. Parallel studies of the dependence of the electron transfer rate on the length of the DNA suggest that transfer from this system obeys a "collision" mechanism in which the redox reporter physically contacts the electrode surface prior to the exchange of electrons.

摘要

尽管已经进行了 25 年的努力,但对于(或来自)电极结合的双链 DNA 中电子转移的机制仍然存在严重的问题。部分原因是,关于最广泛提出的传输机制(通过π堆叠从鸟嘌呤到鸟嘌呤跳跃)中鸟嘌呤碱基假定关键作用的对照实验似乎在之前的文献中缺失。对此,我们采用了计时安培法,该方法可以高精度地确定电子转移速率,以表征与附着在电极上的 DNA 双链上的氧化还原报告器的转移。具体而言,我们已经测量了鸟嘌呤和碱基错配对这种结构相关的电子转移速率的影响。这样做的结果是,与之前的报告相反,转移速率在相对严格的实验置信区间内不受任何影响。对电子转移速率对 DNA 长度的依赖性的平行研究表明,该系统的转移遵循一种“碰撞”机制,其中氧化还原报告器在电子交换之前物理接触电极表面。

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本文引用的文献

1
DNA Hybridization To Interface Current-Producing Cells with Electrode Surfaces.
ACS Cent Sci. 2018 Jul 25;4(7):880-884. doi: 10.1021/acscentsci.8b00255. Epub 2018 Jul 2.
2
Electron Transfer in Spacer-Free DNA Duplexes Tethered to Gold via dA Tags.
Langmuir. 2018 Jul 24;34(29):8472-8479. doi: 10.1021/acs.langmuir.8b01412. Epub 2018 Jul 10.
3
Long-Range Electron Transfer through DNA Films.
Angew Chem Int Ed Engl. 1999 Apr 1;38(7):941-945. doi: 10.1002/(SICI)1521-3773(19990401)38:7<941::AID-ANIE941>3.0.CO;2-7.
4
Subsecond-Resolved Molecular Measurements in the Living Body Using Chronoamperometrically Interrogated Aptamer-Based Sensors.
ACS Sens. 2018 Feb 23;3(2):360-366. doi: 10.1021/acssensors.7b00787. Epub 2017 Nov 21.
5
High Surface Area Electrodes Generated via Electrochemical Roughening Improve the Signaling of Electrochemical Aptamer-Based Biosensors.
Anal Chem. 2017 Nov 21;89(22):12185-12191. doi: 10.1021/acs.analchem.7b02830. Epub 2017 Nov 10.
6
Simulation-Based Approach to Determining Electron Transfer Rates Using Square-Wave Voltammetry.
Langmuir. 2017 May 9;33(18):4407-4413. doi: 10.1021/acs.langmuir.7b00359. Epub 2017 Apr 26.
9
Helix-Dependent Spin Filtering through the DNA Duplex.
J Am Chem Soc. 2016 Dec 7;138(48):15551-15554. doi: 10.1021/jacs.6b10538. Epub 2016 Nov 22.
10
Effect of a Dual Charge on the DNA-Conjugated Redox Probe on DNA Sensing by Short Hairpin Beacons Tethered to Gold Electrodes.
Anal Chem. 2016 Aug 16;88(16):7984-90. doi: 10.1021/acs.analchem.6b01020. Epub 2016 Jul 29.

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