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组织基因组工程达到千兆碱基规模。

Organizing genome engineering for the gigabase scale.

机构信息

Raytheon BBN Technologies, Cambridge, MA, 02138, USA.

Icahn Institute and Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, 10128, USA.

出版信息

Nat Commun. 2020 Feb 4;11(1):689. doi: 10.1038/s41467-020-14314-z.

Abstract

Genome-scale engineering holds great potential to impact science, industry, medicine, and society, and recent improvements in DNA synthesis have enabled the manipulation of megabase genomes. However, coordinating and integrating the workflows and large teams necessary for gigabase genome engineering remains a considerable challenge. We examine this issue and recommend a path forward by: 1) adopting and extending existing representations for designs, assembly plans, samples, data, and workflows; 2) developing new technologies for data curation and quality control; 3) conducting fundamental research on genome-scale modeling and design; and 4) developing new legal and contractual infrastructure to facilitate collaboration.

摘要

基因组规模的工程具有巨大的影响力,可以作用于科学、工业、医学和社会。最近 DNA 合成技术的进步使得操纵兆碱基大小的基因组成为可能。然而,协调和整合用于大型基因组工程的工作流程和大型团队仍然是一个相当大的挑战。我们通过以下方式来检查和推荐这个问题的解决方案:1)采用和扩展现有的设计、组装计划、样本、数据和工作流程的表示方法;2)开发用于数据管理和质量控制的新技术;3)进行基因组规模建模和设计的基础研究;4)开发新的法律和合同基础设施以促进合作。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6aac/7000699/e3b7f67334d9/41467_2020_14314_Fig1_HTML.jpg

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