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一种新型急性髓系白血病铁死亡相关预后模型的构建与验证

Construction and Validation of a Novel Ferroptosis-Related Prognostic Model for Acute Myeloid Leukemia.

作者信息

Song Ying, Tian Shufang, Zhang Ping, Zhang Nan, Shen Yan, Deng Jianchuan

机构信息

Department of Hematology, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China.

Hematology Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China.

出版信息

Front Genet. 2022 Jan 17;12:708699. doi: 10.3389/fgene.2021.708699. eCollection 2021.

Abstract

Acute myeloid leukemia (AML) is a clonal malignant proliferative blood disorder with a poor prognosis. Ferroptosis, a novel form of programmed cell death, holds great promise for oncology treatment, and has been demonstrated to interfere with the development of various diseases. A range of genes are involved in regulating ferroptosis and can serve as markers of it. Nevertheless, the prognostic significance of these genes in AML remains poorly understood. Transcriptomic and clinical data for AML patients were acquired from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO). Univariate Cox analysis was performed to identify ferroptosis-related genes with prognostic value, and the least absolute shrinkage and selection operator (LASSO) algorithm and stepwise multivariate Cox regression analysis were utilized to optimize gene selection from the TCGA cohort (132 samples) for model construction. Tumor samples from the GEO database (136 samples and 104 samples) were used as validation groups to estimate the predictive performance of the risk model. Finally, an eight-gene prognostic signature (including , , , , , , and ) was identified for the prediction of survival probability and was used to stratify AML patients into high- and low-risk groups. Survival analysis illustrated significantly prolonged overall survival and lower mortality in the low-risk group. The area under the receiver operating characteristic curve demonstrated good results for the training set (1-year: 0.846, 2-years: 0.826, and 3-years: 0.837), which verified the accuracy of the model for predicting patient survival. Independent prognostic analysis indicated that the model could be used as a prognostic factor ( ≤ 0.001). Functional enrichment analyses revealed underlying mechanisms and notable differences in the immune status of the two risk groups. In brief, we conducted and validated a novel ferroptosis-related prognostic model for outcome prediction and risk stratification in AML, with great potential to guide individualized treatment strategies in the future.

摘要

急性髓系白血病(AML)是一种预后较差的克隆性恶性增殖性血液疾病。铁死亡是一种新型程序性细胞死亡形式,在肿瘤治疗方面具有巨大潜力,并且已被证明会干扰多种疾病的发展。一系列基因参与调节铁死亡,可作为其标志物。然而,这些基因在AML中的预后意义仍知之甚少。从癌症基因组图谱(TCGA)和基因表达综合数据库(GEO)获取AML患者的转录组和临床数据。进行单变量Cox分析以鉴定具有预后价值的铁死亡相关基因,并利用最小绝对收缩和选择算子(LASSO)算法及逐步多变量Cox回归分析从TCGA队列(132个样本)中优化基因选择以构建模型。来自GEO数据库的肿瘤样本(136个样本和104个样本)用作验证组,以评估风险模型的预测性能。最后,确定了一个八基因预后特征(包括 , , , , , , 和 )用于预测生存概率,并用于将AML患者分为高风险和低风险组。生存分析表明低风险组的总生存期显著延长且死亡率较低。受试者工作特征曲线下面积在训练集中显示出良好结果(1年:0.846,2年:0.826,3年:0.837),这验证了该模型预测患者生存的准确性。独立预后分析表明该模型可作为一个预后因素(≤0.001)。功能富集分析揭示了两个风险组潜在机制及免疫状态的显著差异。简而言之,我们构建并验证了一种用于AML预后预测和风险分层的新型铁死亡相关预后模型,在未来指导个体化治疗策略方面具有巨大潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4082/8803125/04f6bdbcd63c/fgene-12-708699-g001.jpg

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