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一个与免疫衰老相关的基因特征,用于评估膀胱癌的预后、免疫治疗反应和顺铂敏感性。

An Immunosenescence-Related Gene Signature to Evaluate the Prognosis, Immunotherapeutic Response, and Cisplatin Sensitivity of Bladder Cancer.

机构信息

Department of Urology, The Third Affiliated Hospital of Southern Medical University, Guangzhou 510000, China.

The Third School of Clinical Medicine, Southern Medical University, Guangzhou 510000, China.

出版信息

Dis Markers. 2022 Mar 2;2022:2143892. doi: 10.1155/2022/2143892. eCollection 2022.

Abstract

Immunosenescence refers to the immune system undergoing a series of degenerative changes with advancing age and is tightly associated with the initiation and progression of cancers. However, the immunosenescence-related genes as critical biomarkers for bladder cancer (BLCA) have not been systematically analyzed. We retrieved the immunosenescence-related genes from the public database and verified their association with hallmarks of immunosenescence based on The Cancer Genome Atlas (TCGA) cohort. Through gene pairing, Lasso, and univariate Cox regression, an 8-gene pair model was constructed to evaluate the overall survival of BLCA, which was then validated in the training cohort ( < 0.001, = 396), two external validation cohorts ( < 0.05, = 165; < 0.001, = 224), and local samples ( < 0.05, = 10). We also downloaded the clinical information and gene expression matrices of other 32 different cancers from TCGA. The established model showed significant predictive value for the prognosis in 15 cancers ( < 0.05). The risk model could also serve as a promising predictor for immunotherapeutic response, which has been verified by the TIDE algorithm ( < 0.05), IMvigor210 dataset ( < 0.01, = 298), and other two datasets correlated with immunotherapy ( < 0.05, = 56; = 0.17, = 27). The TCGA dataset, in vitro cell experiments, and pan-cancer analysis displayed that the gene signature was associated with cisplatin sensitivity ( < 0.05). Overall, we proposed a novel immunosenescence-related gene signature to predict prognosis, immunotherapeutic response, and cisplatin sensitivity of BLCA, which were validated in different independent cohorts, local samples, and pan-cancer analyses.

摘要

免疫衰老是指免疫系统随着年龄的增长而发生一系列退行性变化,与癌症的发生和发展密切相关。然而,作为膀胱癌(BLCA)关键生物标志物的免疫衰老相关基因尚未得到系统分析。我们从公共数据库中检索到免疫衰老相关基因,并基于癌症基因组图谱(TCGA)队列验证了它们与免疫衰老标志之间的关联。通过基因配对、lasso 和单因素 Cox 回归,构建了一个 8 基因对模型来评估 BLCA 的总生存率,然后在训练队列(<0.001,n=396)、两个外部验证队列(<0.05,n=165;<0.001,n=224)和本地样本(<0.05,n=10)中进行验证。我们还从 TCGA 下载了其他 32 种不同癌症的临床信息和基因表达矩阵。该模型在 15 种癌症的预后评估中具有显著的预测价值(<0.05)。该风险模型还可以作为免疫治疗反应的有前途的预测因子,这已经通过 TIDE 算法(<0.05)、IMvigor210 数据集(<0.01,n=298)和其他两个与免疫治疗相关的数据集(<0.05,n=56;n=0.17,n=27)得到验证。TCGA 数据集、体外细胞实验和泛癌症分析显示,该基因特征与顺铂敏感性相关(<0.05)。总之,我们提出了一个新的免疫衰老相关基因特征,用于预测 BLCA 的预后、免疫治疗反应和顺铂敏感性,在不同的独立队列、本地样本和泛癌症分析中得到了验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2fc0/8915927/3d76d709b728/DM2022-2143892.002.jpg

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