Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, 77840, USA.
College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea.
Nat Commun. 2022 May 16;13(1):2695. doi: 10.1038/s41467-022-30389-2.
Diacylglycerol (DAG) is a versatile lipid whose 1,2-sn-stereoisomer serves both as second messenger in signal transduction pathways that control vital cellular processes, and as metabolic precursor for downstream signaling lipids such as phosphatidic acid. Effector proteins translocate to available DAG pools in the membranes by using conserved homology 1 (C1) domains as DAG-sensing modules. Yet, how C1 domains recognize and capture DAG in the complex environment of a biological membrane has remained unresolved for the 40 years since the discovery of Protein Kinase C (PKC) as the first member of the DAG effector cohort. Herein, we report the high-resolution crystal structures of a C1 domain (C1B from PKCδ) complexed to DAG and to each of four potent PKC agonists that produce different biological readouts and that command intense therapeutic interest. This structural information details the mechanisms of stereospecific recognition of DAG by the C1 domains, the functional properties of the lipid-binding site, and the identities of the key residues required for the recognition and capture of DAG and exogenous agonists. Moreover, the structures of the five C1 domain complexes provide the high-resolution guides for the design of agents that modulate the activities of DAG effector proteins.
二酰基甘油(DAG)是一种多功能脂质,其 1,2-sn-立体异构体既作为控制重要细胞过程的信号转导途径中的第二信使,又作为下游信号脂质如磷脂酸的代谢前体。效应蛋白通过使用保守同源结构域 1(C1 结构域)作为 DAG 感应模块,在细胞膜中可用的 DAG 池中移位。然而,自发现蛋白激酶 C(PKC)作为 DAG 效应物队列的第一个成员以来的 40 年里,C1 结构域如何在生物膜的复杂环境中识别和捕获 DAG 仍然没有得到解决。在此,我们报告了一个 C1 结构域(来自 PKCδ的 C1B)与 DAG 以及四种强效 PKC 激动剂复合物的高分辨率晶体结构,这四种激动剂产生不同的生物学读数,并引起强烈的治疗兴趣。这些结构信息详细说明了 C1 结构域对 DAG 的立体特异性识别的机制、脂质结合位点的功能特性以及识别和捕获 DAG 和外源激动剂所需的关键残基的身份。此外,五个 C1 结构域复合物的结构为设计调节 DAG 效应蛋白活性的试剂提供了高分辨率指南。