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单细胞转录组学:一种研究糖尿病肾病的新工具。

Single-cell transcriptomics: A new tool for studying diabetic kidney disease.

作者信息

Mao Zi-Hui, Gao Zhong-Xiuzi, Liu Yong, Liu Dong-Wei, Liu Zhang-Suo, Wu Peng

机构信息

Traditional Chinese Medicine Integrated Department of Nephrology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.

Institute of Nephrology, Zhengzhou University, Zhengzhou, China.

出版信息

Front Physiol. 2023 Jan 4;13:1053850. doi: 10.3389/fphys.2022.1053850. eCollection 2022.

Abstract

The kidney is a complex organ comprising various functional partitions and special cell types that play important roles in maintaining homeostasis in the body. Diabetic kidney disease (DKD) is the leading cause of end-stage renal disease and is an independent risk factor for cardiovascular diseases. Owing to the complexity and heterogeneity of kidney structure and function, the mechanism of DKD development has not been fully elucidated. Single-cell sequencing, including transcriptomics, epigenetics, metabolomics, and proteomics etc., is a powerful technology that enables the analysis of specific cell types and states, specifically expressed genes or pathways, cell differentiation trajectories, intercellular communication, and regulation or co-expression of genes in various diseases. Compared with other omics, RNA sequencing is a more developed technique with higher utilization of tissues or samples. This article reviewed the application of single-cell transcriptomics in the field of DKD and highlighted the key signaling pathways in specific tissues or cell types involved in the occurrence and development of DKD. The comprehensive understanding of single-cell transcriptomics through single-cell RNA-seq and single-nucleus RNA-seq will provide us new insights into the pathogenesis and treatment strategy of various diseases including DKD.

摘要

肾脏是一个复杂的器官,由各种功能分区和特殊细胞类型组成,这些在维持身体内环境稳定中发挥着重要作用。糖尿病肾病(DKD)是终末期肾病的主要原因,并且是心血管疾病的独立危险因素。由于肾脏结构和功能的复杂性及异质性,DKD的发病机制尚未完全阐明。单细胞测序,包括转录组学、表观遗传学、代谢组学和蛋白质组学等,是一项强大的技术,能够分析特定的细胞类型和状态、特异性表达的基因或通路、细胞分化轨迹、细胞间通讯以及各种疾病中基因的调控或共表达。与其他组学相比,RNA测序是一种更成熟的技术,对组织或样本的利用率更高。本文综述了单细胞转录组学在DKD领域的应用,并强调了参与DKD发生发展的特定组织或细胞类型中的关键信号通路。通过单细胞RNA测序和单核RNA测序对单细胞转录组学的全面理解将为我们提供对包括DKD在内的各种疾病的发病机制和治疗策略的新见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6df4/9846140/17a48d73899e/fphys-13-1053850-g001.jpg

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