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在检测资源稀缺的情况下对多维度异质人群进行传染病筛查,并应用于新冠肺炎。

Screening multi-dimensional heterogeneous populations for infectious diseases under scarce testing resources, with application to COVID-19.

作者信息

El Hajj Hussein, Bish Douglas R, Bish Ebru K, Aprahamian Hrayer

机构信息

Department of Industrial and Systems Engineering Virginia Tech Blacksburg Virginia USA.

Department of Information Systems, Statistics, and Management Science University of Alabama Tuscaloosa Alabama USA.

出版信息

Nav Res Logist. 2022 Feb;69(1):3-20. doi: 10.1002/nav.21985. Epub 2021 Mar 16.

Abstract

Testing provides essential information for managing infectious disease outbreaks, such as the COVID-19 pandemic. When testing resources are scarce, an important managerial decision is who to test. This decision is compounded by the fact that potential testing subjects are heterogeneous in multiple dimensions that are important to consider, including their likelihood of being disease-positive, and how much potential harm would be averted through testing and the subsequent interventions. To increase testing coverage, pooled testing can be utilized, but this comes at a cost of increased false-negatives when the test is imperfect. Then, the decision problem is to partition the heterogeneous testing population into three mutually exclusive sets: those to be individually tested, those to be pool tested, and those not to be tested. Additionally, the subjects to be pool tested must be further partitioned into testing pools, potentially containing different numbers of subjects. The objectives include the minimization of harm (through detection and mitigation) or maximization of testing coverage. We develop data-driven optimization models and algorithms to design pooled testing strategies, and show, via a COVID-19 contact tracing case study, that the proposed testing strategies can substantially outperform the current practice used for COVID-19 contact tracing (individually testing those contacts with symptoms). Our results demonstrate the substantial benefits of optimizing the testing design, while considering the multiple dimensions of population heterogeneity and the limited testing capacity.

摘要

检测为管理传染病疫情(如新冠疫情)提供了重要信息。当检测资源稀缺时,一个重要的管理决策是确定检测对象。这一决策因潜在检测对象在多个重要维度上存在异质性而变得更加复杂,这些维度包括他们呈疾病阳性的可能性,以及通过检测和后续干预可以避免多少潜在危害。为了提高检测覆盖率,可以采用混合检测,但如果检测不完美,这会带来假阴性增加的代价。那么,决策问题就是将异质的检测人群划分为三个相互排斥的集合:单独检测的人群、混合检测的人群和不进行检测的人群。此外,要进行混合检测的对象必须进一步划分为检测组,每个检测组可能包含不同数量的对象。目标包括将危害最小化(通过检测和缓解)或使检测覆盖率最大化。我们开发了数据驱动的优化模型和算法来设计混合检测策略,并通过一个新冠接触者追踪案例研究表明,所提出的检测策略可以显著优于当前用于新冠接触者追踪的做法(对有症状的接触者进行单独检测)。我们的结果表明,在考虑人群异质性的多个维度和有限的检测能力的同时,优化检测设计具有巨大益处。

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本文引用的文献

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False-negative results of initial RT-PCR assays for COVID-19: A systematic review.
PLoS One. 2020 Dec 10;15(12):e0242958. doi: 10.1371/journal.pone.0242958. eCollection 2020.
2
False-positive COVID-19 results: hidden problems and costs.
Lancet Respir Med. 2020 Dec;8(12):1167-1168. doi: 10.1016/S2213-2600(20)30453-7. Epub 2020 Sep 29.
3
Clinical, immunological and virological characterization of COVID-19 patients that test re-positive for SARS-CoV-2 by RT-PCR.
EBioMedicine. 2020 Sep;59:102960. doi: 10.1016/j.ebiom.2020.102960. Epub 2020 Aug 24.
4
Pooling Upper Respiratory Specimens for Rapid Mass Screening of COVID-19 by Real-Time RT-PCR.
Emerg Infect Dis. 2020 Oct;26(10):2469-2472. doi: 10.3201/eid2610.201955. Epub 2020 Aug 26.
5
The mathematical strategy that could transform coronavirus testing.
Nature. 2020 Jul;583(7817):504-505. doi: 10.1038/d41586-020-02053-6.
7
Large-scale implementation of pooled RNA extraction and RT-PCR for SARS-CoV-2 detection.
Clin Microbiol Infect. 2020 Sep;26(9):1248-1253. doi: 10.1016/j.cmi.2020.06.009. Epub 2020 Jun 23.
8
Pooling of samples for testing for SARS-CoV-2 in asymptomatic people.
Lancet Infect Dis. 2020 Nov;20(11):1231-1232. doi: 10.1016/S1473-3099(20)30362-5. Epub 2020 Apr 28.
9
Estimate of the Basic Reproduction Number for COVID-19: A Systematic Review and Meta-analysis.
J Prev Med Public Health. 2020 May;53(3):151-157. doi: 10.3961/jpmph.20.076. Epub 2020 Mar 20.

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