Yuan Ziwei, Yang Xuejia, Hu Zujian, Gao Yuanyuan, Yan Penghua, Zheng Fan, Guo Yangyang, Wang Xiaowu, Zhou Jingzong
Key Laboratory of Diagnosis and Treatment of Severe Hepato-Pancreatic Diseases of Zhejiang Province, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, 325000, China.
Department of Endocrinology, Taizhou Hospital of Zhejiang Province Affiliated to Wenzhou Medical University, Taizhou, Zhejiang, China.
Heliyon. 2024 May 8;10(10):e30827. doi: 10.1016/j.heliyon.2024.e30827. eCollection 2024 May 30.
Neutrophil extracellular traps (NETs) and other factors play a significant role in impacting the prognosis of patients with Hepatocellular carcinoma (HCC). Nevertheless, further research is warranted to fully elucidate the prognostic implications of NETs in patients with HCC. We employed a hierarchical clustering technique to examine the Cancer Genome Atlas-Liver Hepatocellular Carcinoma (TCGA-LIHC) data and identified subtypes associated with NETs. Subsequently, we utilized LASSO regression analysis to identify a distinct gene expression pattern within these subtypes. The strength of this signature was further validated through analysis of TCGA-LIHC and International Cancer Genome Consortium-Liver Cancer (ICGC-LIRI-JP) data. Our findings resulted in the construction of a six-gene signature related to NETs, which can predict survival outcomes in HCC patients. To enhance the predictive accuracy of our tool, we developed a nomogram that integrates the NETs signature with clinicopathological characteristics. We validated the significance of NETs in HCC patients using qRT-PCR and immunohistochemistry assays, along with in vitro experiments targeting high-risk genes. Furthermore, our exploration of the immune microenvironment uncovered augmented immune-specific metrics within the low-risk cohort, implying potential disparities in immune-related attributes between the high-risk and low-risk contingents. In summary, the NETs signature we discovered serves as a valuable biomarker and provides guidance for personalized therapy in HCC patients.
中性粒细胞胞外陷阱(NETs)和其他因素在影响肝细胞癌(HCC)患者的预后方面发挥着重要作用。然而,仍需要进一步研究以充分阐明NETs在HCC患者中的预后意义。我们采用分层聚类技术来分析癌症基因组图谱-肝细胞癌(TCGA-LIHC)数据,并确定与NETs相关的亚型。随后,我们利用套索回归分析在这些亚型中识别出一种独特的基因表达模式。通过对TCGA-LIHC和国际癌症基因组联盟-肝癌(ICGC-LIRI-JP)数据的分析,进一步验证了该特征的强度。我们的研究结果构建了一个与NETs相关的六基因特征,可预测HCC患者的生存结果。为提高我们工具的预测准确性,我们开发了一种将NETs特征与临床病理特征相结合的列线图。我们使用qRT-PCR和免疫组织化学检测以及针对高危基因的体外实验,验证了NETs在HCC患者中的重要性。此外,我们对免疫微环境的探索发现低风险队列中的免疫特异性指标有所增加,这意味着高风险和低风险群体在免疫相关属性方面可能存在差异。总之,我们发现的NETs特征是一种有价值的生物标志物,并为HCC患者的个性化治疗提供指导。