Du Yong, Fang Hong Xia, Zhang Qi, Zhang Hui Li, Hong Zhi
Centre for THz Research, China Jiliang University, Hangzhou 310018, China.
Centre for THz Research, China Jiliang University, Hangzhou 310018, China.
Spectrochim Acta A Mol Biomol Spectrosc. 2016 Jan 15;153:580-5. doi: 10.1016/j.saa.2015.09.020. Epub 2015 Sep 30.
As an important component of double-stranded DNA, adenine has powerful hydrogen-bond capability, due to rich hydrogen bond donors and acceptors existing within its molecular structure. Therefore, it is easy to form cocrystal between adenine and other small molecules with intermolecular hydrogen-bond effect. In this work, cocrystal of adenine and fumaric acid has been characterized as model system by FT-IR and FT-Raman spectral techniques. The experimental results show that the cocrystal formed between adenine and fumaric acid possesses unique spectroscopical characteristic compared with that of starting materials. Density functional theory (DFT) calculation has been performed to optimize the molecular structures and simulate vibrational modes of adenine, fumaric acid and the corresponding cocrystal. Combining the theoretical and experimental vibrational results, the characteristic bands corresponding to bending and stretching vibrations of amino and carbonyl groups within cocrystal are shifted into lower frequencies upon cocrystal formation, and the corresponding bond lengths show some increase due to the effect of intermolecular hydrogen bonding. Different vibrational modes shown in the experimental spectra have been assigned based on the simulation DFT results. The study could provide experimental and theoretical benchmarks to characterize cocrystal formed between active ingredients and cocrystal formers and also the intermolecular hydrogen-bond effect within cocrystal formation process by vibrational spectroscopic techniques.
作为双链DNA的重要组成部分,腺嘌呤具有强大的氢键能力,这是由于其分子结构中存在丰富的氢键供体和受体。因此,腺嘌呤与其他小分子之间容易通过分子间氢键作用形成共晶体。在本工作中,通过傅里叶变换红外光谱(FT-IR)和傅里叶变换拉曼光谱(FT-Raman)技术对腺嘌呤与富马酸的共晶体进行了表征,作为模型体系。实验结果表明,腺嘌呤与富马酸形成的共晶体与起始原料相比具有独特的光谱特征。进行了密度泛函理论(DFT)计算,以优化腺嘌呤、富马酸及相应共晶体的分子结构并模拟其振动模式。结合理论和实验振动结果,共晶体形成后,共晶体中氨基和羰基弯曲和拉伸振动对应的特征峰向低频移动,由于分子间氢键的作用,相应的键长有所增加。基于DFT模拟结果对实验光谱中显示的不同振动模式进行了归属。该研究可为通过振动光谱技术表征活性成分与共晶形成剂之间形成的共晶体以及共晶体形成过程中的分子间氢键作用提供实验和理论基准。