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一种基于RNA聚合酶可控表达的合成生长开关。

A synthetic growth switch based on controlled expression of RNA polymerase.

作者信息

Izard Jérôme, Gomez Balderas Cindy D C, Ropers Delphine, Lacour Stephan, Song Xiaohu, Yang Yifan, Lindner Ariel B, Geiselmann Johannes, de Jong Hidde

机构信息

Université Grenoble Alpes, Laboratoire Interdisciplinaire de Physique (CNRS UMR 5588), Saint Martin d'Hères, France INRIA, Grenoble - Rhône-Alpes research center, Saint Ismier, France.

INRIA, Grenoble - Rhône-Alpes research center, Saint Ismier, France.

出版信息

Mol Syst Biol. 2015 Nov 23;11(11):840. doi: 10.15252/msb.20156382.

Abstract

The ability to control growth is essential for fundamental studies of bacterial physiology and biotechnological applications. We have engineered an Escherichia coli strain in which the transcription of a key component of the gene expression machinery, RNA polymerase, is under the control of an inducible promoter. By changing the inducer concentration in the medium, we can adjust the RNA polymerase concentration and thereby switch bacterial growth between zero and the maximal growth rate supported by the medium. We show that our synthetic growth switch functions in a medium-independent and reversible way, and we provide evidence that the switching phenotype arises from the ultrasensitive response of the growth rate to the concentration of RNA polymerase. We present an application of the growth switch in which both the wild-type E. coli strain and our modified strain are endowed with the capacity to produce glycerol when growing on glucose. Cells in which growth has been switched off continue to be metabolically active and harness the energy gain to produce glycerol at a twofold higher yield than in cells with natural control of RNA polymerase expression. Remarkably, without any further optimization, the improved yield is close to the theoretical maximum computed from a flux balance model of E. coli metabolism. The proposed synthetic growth switch is a promising tool for gaining a better understanding of bacterial physiology and for applications in synthetic biology and biotechnology.

摘要

控制生长的能力对于细菌生理学的基础研究和生物技术应用至关重要。我们构建了一种大肠杆菌菌株,其中基因表达机制的关键组分RNA聚合酶的转录受诱导型启动子的控制。通过改变培养基中的诱导剂浓度,我们可以调节RNA聚合酶的浓度,从而在零生长速率和培养基支持的最大生长速率之间切换细菌的生长状态。我们表明,我们的合成生长开关以与培养基无关且可逆的方式起作用,并且我们提供证据表明,切换表型源于生长速率对RNA聚合酶浓度的超敏感反应。我们展示了生长开关的一种应用,即在野生型大肠杆菌菌株和我们的改良菌株在以葡萄糖为碳源生长时均赋予产生甘油的能力。生长已关闭的细胞继续保持代谢活性,并利用能量获得以比RNA聚合酶表达自然调控的细胞高出两倍的产量产生甘油。值得注意的是,无需任何进一步优化,提高的产量就接近根据大肠杆菌代谢通量平衡模型计算出的理论最大值。所提出的合成生长开关是用于更好地理解细菌生理学以及用于合成生物学和生物技术应用的有前途的工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1528/4670729/094e3044baa2/MSB-11-840-g002.jpg

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