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InterPro 在 2022 年。

InterPro in 2022.

机构信息

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.

Google Research, Brain team, Cambridge, MA, USA.

出版信息

Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. doi: 10.1093/nar/gkac993.

Abstract

The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. Here, we report recent developments with InterPro (version 90.0) and its associated software, including updates to data content and to the website. These developments extend and enrich the information provided by InterPro, and provide a more user friendly access to the data. Additionally, we have worked on adding Pfam website features to the InterPro website, as the Pfam website will be retired in late 2022. We also show that InterPro's sequence coverage has kept pace with the growth of UniProtKB. Moreover, we report the development of a card game as a method of engaging the non-scientific community. Finally, we discuss the benefits and challenges brought by the use of artificial intelligence for protein structure prediction.

摘要

InterPro 数据库(https://www.ebi.ac.uk/interpro/)提供了一种将蛋白质序列整合到家族中的综合分类方法,并确定了功能重要的结构域和保守位点。在这里,我们报告了 InterPro(版本 90.0)及其相关软件的最新发展情况,包括对数据内容和网站的更新。这些发展扩展和丰富了 InterPro 提供的信息,并提供了更便于用户访问数据的方式。此外,我们致力于将 Pfam 网站的功能添加到 InterPro 网站中,因为 Pfam 网站将于 2022 年底退役。我们还展示了 InterPro 的序列覆盖率与 UniProtKB 的增长保持同步。此外,我们报告了开发纸牌游戏作为吸引非科学界的一种方法。最后,我们讨论了人工智能在蛋白质结构预测中的使用带来的好处和挑战。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89f0/9825450/839ee6c9f936/gkac993fig1.jpg

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