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严重急性呼吸综合征冠状病毒2(SARS-CoV-2)几种奥密克戎亚变体在全球的分布、传播模式及趋势

Global Distribution, Dispersal Patterns, and Trend of Several Omicron Subvariants of SARS-CoV-2 across the Globe.

作者信息

Kopsidas Ioannis, Karagiannidou Sofia, Kostaki Evangelia Georgia, Kousi Dimitra, Douka Eirini, Sfikakis Petros P, Moustakidis Serafeim, Kokkotis Christos, Tsaopoulos Dimitrios, Tseti Ioulia, Zaoutis Theoklis, Paraskevis Dimitrios

机构信息

Center for Clinical Epidemiology and Outcomes Research (CLEO), 15451 Athens, Greece.

National Public Health Organisation (NPHO), 15123 Athens, Greece.

出版信息

Trop Med Infect Dis. 2022 Nov 12;7(11):373. doi: 10.3390/tropicalmed7110373.

Abstract

Our study aims to describe the global distribution and dispersal patterns of the SARS-CoV-2 Omicron subvariants. Genomic surveillance data were extracted from the CoV-Spectrum platform, searching for BA.1*, BA.2*, BA.3*, BA.4*, and BA.5* variants by geographic region. BA.1* increased in November 2021 in South Africa, with a similar increase across all continents in early December 2021. BA.1* did not reach 100% dominance in all continents. The spread of BA.2*, first described in South Africa, differed greatly by geographic region, in contrast to BA.1*, which followed a similar global expansion, firstly occurring in Asia and subsequently in Africa, Europe, Oceania, and North and South America. BA.4* and BA.5* followed a different pattern, where BA.4* reached high proportions (maximum 60%) only in Africa. BA.5* is currently, by Mid-August 2022, the dominant strain, reaching almost 100% across Europe, which is the first continent aside from Africa to show increasing proportions, and Asia, the Americas, and Oceania are following. The emergence of new variants depends mostly on their selective advantage, translated as enhanced transmissibility and ability to invade people with existing immunity. Describing these patterns is useful for a better understanding of the epidemiology of the VOCs' transmission and for generating hypotheses about the future of emerging variants.

摘要

我们的研究旨在描述严重急性呼吸综合征冠状病毒2(SARS-CoV-2)奥密克戎亚变体的全球分布和传播模式。从CoV-Spectrum平台提取基因组监测数据,按地理区域搜索BA.1*、BA.2*、BA.3*、BA.4和BA.5变体。BA.1于2021年11月在南非出现增长,并于2021年12月初在各大洲出现类似增长。BA.1在所有大洲并未达到100%的优势地位。最早在南非发现的BA.2的传播在不同地理区域差异很大,与之形成对比的是,BA.1呈现类似的全球扩张模式,首先出现在亚洲,随后传播至非洲、欧洲、大洋洲以及南北美洲。BA.4和BA.5呈现不同模式,其中BA.4仅在非洲达到高比例(最高60%)。截至2022年8月中旬,BA.5是主要毒株,在欧洲几乎达到100%,欧洲是除非洲外首个显示比例上升的大洲,亚洲、美洲和大洋洲也紧随其后。新变体的出现主要取决于其选择优势,即更高的传播性以及感染具有现有免疫力人群的能力。描述这些模式有助于更好地理解VOCs传播的流行病学情况,并对新出现变体的未来发展提出假设。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9156/9698960/47c35c216b41/tropicalmed-07-00373-g001.jpg

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