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透明细胞肾细胞癌中与乳糖化相关的基因修饰的预后影响:对分子景观和治疗机会的深入了解。

Prognostic impact of lactylation-associated gene modifications in clear cell renal cell carcinoma: Insights into molecular landscape and therapeutic opportunities.

机构信息

Department of Laboratory Medicine, Meizhou Meixian District Hospital of Traditional Chinese Medicine, Meizhou, China.

Department of Oncology and Southwest Cancer Centre, Southwest Hospital, Third Military Medical University (Army Medical University), Chongqing, China.

出版信息

Environ Toxicol. 2024 Mar;39(3):1360-1373. doi: 10.1002/tox.24040. Epub 2023 Nov 16.

Abstract

Clear cell renal cell carcinoma (ccRCC) stands as a challenging subtype of kidney cancer, frequently complicating patient prognosis due to factors like postsurgical recurrences or late-stage diagnoses. In this study, we employed bioinformatics to investigate lactylation modifications in ccRCC, focusing on the TCGA-KIRC cohort. Out of 328 lactylation-associated genes, 31 emerged as differentially expressed, with 16 showing a marked correlation with overall survival. These genes exhibited strong protein-protein interactions and significant expression correlations. Intriguingly, a notable loss of gene copy numbers suggests potential implications in tumor progression. Utilizing unsupervised clustering, KIRC samples were grouped into two distinct subcategories, each showcasing different survival outcomes. While pathway enrichment highlighted an aggressive, inflammation-driven profile for subgroup 2, subgroup 1 was characterized by metabolic prominence. Furthermore, subgroup 2 presented an intensified inflammatory response, hinting at potential immune exhaustion. Capitalizing on machine learning, we developed a risk model using the TCGA-KIRC dataset, efficiently categorizing ccRCC patients into high- and low-risk clusters. Notably, those in the low-risk group indicated a more favorable survival trajectory. Clinical evaluations further corroborated these findings, linking better outcomes with reduced risk scores. Additionally, observed mutation patterns allude to a potential association between elevated risk scores and cytokine storms. TIDE analysis illuminated possible immunotherapeutic benefits for the low-risk group, underscored by an evident rise in microsatellite instability. Finally, our drug sensitivity evaluations revealed distinct therapeutic responses between the groups. In summary, this research underscores the pivotal role of lactylation modifications in ccRCC and introduces a promising prognostic model. These revelations pave the way for enhanced prognostic precision, presenting a promising path toward personalized treatment strategies and enriching our comprehension of the multifaceted molecular landscape of the disease.

摘要

透明细胞肾细胞癌(ccRCC)是一种具有挑战性的肾癌亚型,由于术后复发或晚期诊断等因素,常使患者预后恶化。在这项研究中,我们运用生物信息学方法研究了 ccRCC 中的乳酰化修饰,重点关注 TCGA-KIRC 队列。在 328 个乳酰化相关基因中,有 31 个表现出差异表达,其中 16 个与总生存期显著相关。这些基因表现出强烈的蛋白质-蛋白质相互作用和显著的表达相关性。有趣的是,显著的基因拷贝数缺失表明其可能与肿瘤进展有关。通过无监督聚类,KIRC 样本被分为两个不同的亚组,每个亚组都显示出不同的生存结果。虽然通路富集强调了亚组 2 的侵袭性、炎症驱动特征,但亚组 1 以代谢为特征。此外,亚组 2 表现出强烈的炎症反应,暗示潜在的免疫衰竭。利用机器学习,我们使用 TCGA-KIRC 数据集开发了一个风险模型,能够有效地将 ccRCC 患者分为高风险和低风险聚类。值得注意的是,低风险组的患者具有更有利的生存轨迹。临床评估进一步证实了这些发现,较低的风险评分与更好的结果相关。此外,观察到的突变模式表明,较高的风险评分与细胞因子风暴之间可能存在关联。TIDE 分析揭示了低风险组可能从免疫治疗中获益,微卫星不稳定性明显增加。最后,我们的药物敏感性评估显示两组之间存在不同的治疗反应。总之,这项研究强调了乳酰化修饰在 ccRCC 中的关键作用,并提出了一个有前途的预后模型。这些发现为提高预后精度提供了可能,为制定个性化治疗策略开辟了道路,并丰富了我们对该疾病多层面分子特征的理解。

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