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RKIP()和LKB1()共表达的泛癌计算分析突出了肿瘤微环境中不同的免疫代谢动态和治疗反应。

Pan-Cancer Computational Analysis of RKIP () and LKB1 () Co-Expression Highlights Distinct Immunometabolic Dynamics and Therapeutic Responses Within the Tumor Microenvironment.

作者信息

Skouradaki Evangelia, Zaravinos Apostolos, Panagopoulou Maria, Chatzaki Ekaterini, Dovrolis Nikolas, Baritaki Stavroula

机构信息

Laboratory of Experimental Oncology, Division of Surgery, School of Medicine, University of Crete, 71003 Heraklion, Greece.

Cancer Genetics, Genomic and Systems Biology Group, Basic and Translational Cancer Research Center (BTCRC), 1516 Nicosia, Cyprus.

出版信息

Int J Mol Sci. 2025 Jul 24;26(15):7145. doi: 10.3390/ijms26157145.

Abstract

RKIP and LKB1, encoded by and , respectively, have emerged as key regulators of cancer pathophysiology. However, their role in shaping tumor progression through modulation of the tumor microenvironment (TME) is not yet fully understood. To address this, we performed a comprehensive pan-cancer analysis using TCGA transcriptomic data across 33 cancer types, grouped by their tissue of origin. We investigated co-expression and its association with transcriptomic reprogramming in major TME components, including immune, mechanical, metabolic, and hypoxic subtypes. Our results revealed both positive and inverse correlations between co-expression and TME-related molecular signatures, which did not align with classical cancer categorizations. In a subset of tumors, co-expression was significantly associated with improved overall survival and reduced mortality (HR < 1). Notably, we predominantly observed inverse correlations with pro-inflammatory and immunosuppressive chemokines, immune checkpoints, extracellular matrix components, and key regulators of epithelial-to-mesenchymal transition. In contrast, we found positive associations with anti-inflammatory chemokines and their receptors. Importantly, co-expression was consistently linked to reduced expression of drug resistance genes and greater chemosensitivity across multiple tumor types. Our findings underscore the co-expression of and as a promising target for future studies aimed at elucidating its potential as a biomarker for prognosis and therapeutic response in precision oncology.

摘要

分别由 和 编码的RKIP和LKB1已成为癌症病理生理学的关键调节因子。然而,它们通过调节肿瘤微环境(TME)在塑造肿瘤进展中的作用尚未完全明确。为了解决这个问题,我们使用来自33种癌症类型的TCGA转录组数据进行了全面的泛癌分析,这些癌症类型按其起源组织分组。我们研究了 共表达及其与主要TME成分(包括免疫、机械、代谢和缺氧亚型)中转录组重编程的关联。我们的结果揭示了 共表达与TME相关分子特征之间的正相关和负相关,这与经典癌症分类不一致。在一部分肿瘤中, 共表达与总体生存率提高和死亡率降低显著相关(HR < 1)。值得注意的是,我们主要观察到与促炎和免疫抑制趋化因子、免疫检查点、细胞外基质成分以及上皮-间质转化的关键调节因子呈负相关。相比之下,我们发现与抗炎趋化因子及其受体呈正相关。重要的是, 共表达在多种肿瘤类型中始终与耐药基因表达降低和更高的化学敏感性相关。我们的研究结果强调了 和 的共表达作为未来研究的一个有前景的靶点,旨在阐明其作为精准肿瘤学中预后和治疗反应生物标志物的潜力。

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